Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42680 228 / 8e-75 Protein of unknown function, DUF617 (.1.2) AT4G39610 165 / 3e-50 Protein of unknown function, DUF617 (.1) AT2G21990 160 / 2e-48 Protein of unknown function, DUF617 (.1) AT5G06990 160 / 3e-48 Protein of unknown function, DUF617 (.1) AT3G25640 157 / 5e-47 Protein of unknown function, DUF617 (.1) AT2G41660 147 / 1e-42 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT5G23100 137 / 3e-39 Protein of unknown function, DUF617 (.1) AT2G37880 134 / 4e-38 Protein of unknown function, DUF617 (.1) AT1G21050 132 / 2e-37 Protein of unknown function, DUF617 (.1) AT1G76610 123 / 4e-34 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035847 [exp] 174 / 2e-52 AT2G21990 306 / 1e-104 Protein of unknown function, DUF617 (.1) Lus10036630 [exp] 172 / 6e-52 AT4G39610 308 / 5e-105 Protein of unknown function, DUF617 (.1) Lus10031059 [exp] 166 / 7e-50 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10035443 [exp] 160 / 3e-47 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10019166 [exp] 155 / 3e-46 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 152 / 1e-44 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10027241 [exp] 145 / 5e-42 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10000863 [exp] 138 / 2e-39 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10042046 [exp] 137 / 8e-39 AT2G41660 170 / 3e-51 mizu-kussei 1, Protein of unknown function, DUF617 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G035000 [exp] 280 / 2e-95 AT5G42680 286 / 2e-98 Protein of unknown function, DUF617 (.1.2) Potri.002G128800 [exp] 278 / 1e-94 AT5G42680 269 / 2e-91 Protein of unknown function, DUF617 (.1.2) Potri.005G084000 [exp] 179 / 1e-55 AT2G21990 327 / 4e-114 Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 167 / 8e-51 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.003G193700 [exp] 165 / 4e-50 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.012G058300 [exp] 160 / 4e-48 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.016G056800 [exp] 156 / 1e-46 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.006G048800 [exp] 154 / 7e-46 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 153 / 2e-45 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.015G053000 [exp] 150 / 1e-44 AT5G23100 293 / 3e-100 Protein of unknown function, DUF617 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [flax] [poplar] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Lus10021759 pacid=23154334 polypeptide=Lus10021759 locus=Lus10021759.g ID=Lus10021759.BGIv1.0 annot-version=v1.0 ATGCCGCCGGTGCACTCCAGCCCGCGCTTCCACTACCACACTGAAACCTCTGCCCTCCTCTCTATCCTCAAACAAACAACAACAACCACCGCCACCGCCA CCACCACCTCCGACAACAGCAACAACAAGAAACGCAGCAAATCCAAATTCTCCTCGTCCGGAGGAGGAGGGCTCCTCAAAATGTTGAAGCTCTTCCCAAT GTTAACCACCGGATGCAAGATGGTAGCCTTGCTTGGCCGCCCCAAGAAATCCCCATCCTTGCTCAGAGACAGAGCCGCAGCCACGGGTACCATCTTCGGC CACCGGAAGGGTCGGGTCACCCTAGCAATCCAAGACGACCCGCACTCCCCGGCTCCGACCTTCGTCATTGAGCTCCCCATCCACACGGCGTCGTTTCACC GTGAGATGGCTTCCGACATACTCAGGATCGCGCTCGAGAGCGAGACTAAGAGCTACAAGAAGAAATTGCTTGAGGAATTCATGTGGGCGGTTTACTGTAA CGGCAGGAAGATGGGTTATTCAATTCGGAGGACCAGCTGTAGCTTCGAGGATGAGATTCACGTGATGAAGATGCTGAGAGGGGTTTCTATGGGAGCAGGA GTTTTGCCGCCGGCGGGGAGTGAGGGGAAGGAGACGGCGGTGGATACGGATGGGGAGTTGACTTATATTAGAGGGAGGTTTGAGAGAGTAGTTGGTTCCA AAGACTCGGAAGCTCTGTATATGATTAATCCGGATGGAGCGGTCGGACCAGAATTGAGTATCTTCTTTGTAAGGGCTAATTAG
AA sequence Show only first row Show all	>Lus10021759 pacid=23154334 polypeptide=Lus10021759 locus=Lus10021759.g ID=Lus10021759.BGIv1.0 annot-version=v1.0 MPPVHSSPRFHYHTETSALLSILKQTTTTTATATTTSDNSNNKKRSKSKFSSSGGGGLLKMLKLFPMLTTGCKMVALLGRPKKSPSLLRDRAAATGTIFG HRKGRVTLAIQDDPHSPAPTFVIELPIHTASFHREMASDILRIALESETKSYKKKLLEEFMWAVYCNGRKMGYSIRRTSCSFEDEIHVMKMLRGVSMGAG VLPPAGSEGKETAVDTDGELTYIRGRFERVVGSKDSEALYMINPDGAVGPELSIFFVRAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42680			Protein of unknown function, D...		Lus10021759 [exp]	0	1
AT2G02240		MEE66	maternal effect embryo arrest ...		Lus10018171 [exp]	4.0	0.8660
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10001506 [exp]	4.7	0.8720
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10007702 [exp]	5.2	0.8763
AT4G21500			unknown protein		Lus10011256 [exp]	6.9	0.8595
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	9.3	0.8682
AT4G03230			S-locus lectin protein kinase ...		Lus10031592 [exp]	11.8	0.8618
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10025200 [exp]	12.4	0.8532
AT4G12970		EPFL9, STOMAGEN	stomagen (.1)		Lus10020408 [exp]	18.4	0.8268
AT4G01140			Protein of unknown function (D...		Lus10007859 [exp]	18.7	0.8010
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10036710 [exp]	19.4	0.8138

Compare expression of checked genes

Lus10021759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.