Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003185 [exp] 66 / 8e-13 ND / Lus10022099 [exp] 58 / 6e-10 ND / Lus10004993 [exp] 56 / 9e-09 ND / Lus10012439 [exp] 47 / 2e-06 ND / Lus10005512 [exp] 41 / 0.0002 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021760 pacid=23154310 polypeptide=Lus10021760 locus=Lus10021760.g ID=Lus10021760.BGIv1.0 annot-version=v1.0 ATGGGCAAGGACGATATCGGGATCATTTCTCCTAGATCGATCAGAGGTGTCATACGGACATCAAGGGATGACCTAAAGCGCGTTCCGGAAGTTCGAAAAG TCAATGAGATGAAGATTGTTGATGGAGGGTTAACACACGGACGCCATCCAGGAGTGATGTTTAGCAACATACACCCAAGTAAACGACTAGCTGAAAAGGA GACAACTTCATACCCTCATCTCGCTCCAAAGTCTCGCAAGAAATTAGTGTTAGAACTCCCTTTTGAACTTTCTCCTACTGTTGAGAGCGAAGAGGAGGAA GAACAAGAAATCGAGATGGAGGTCTTAAACAACAATGATGATGGCAACAACAACAATAACAACGACAACCACAACAACAACCGTAATCACGAGGACGGGC ACCACAACAACAATAATGATGCACAGTTTGTTTTCATTCCTCACGAGAAGCCATTGAGAGACTATAGCCGACCTACTCTCAGAGGCACTACTTCAAGCAT TCAATCTCCAATCATTCAAGCTAAGTTGCGTGAGTTTCCAGACCCAGGTTCCGACCGTGTTCGCCGTAAGGTCGTCGACGATCTCCGGGCCATTAAGAAT AATCCTCTTAGTCGCTCGATTAGCTTCGCTCAAAGGTCAGCAATTGTTTCCCTTATGCTAGACCTCAGTTTCTTAAGTCCTGGGTGGTTTTTAAGACCTC GCCGGAAATGGGAGGTGACCGGCCGTAGTTCTGGGCGAGTTCCCAGTTCCTGGGAAGATGACTTGCAAAATTACCGTAGCAATCCCTAG
AA sequence Show only first row Show all	>Lus10021760 pacid=23154310 polypeptide=Lus10021760 locus=Lus10021760.g ID=Lus10021760.BGIv1.0 annot-version=v1.0 MGKDDIGIISPRSIRGVIRTSRDDLKRVPEVRKVNEMKIVDGGLTHGRHPGVMFSNIHPSKRLAEKETTSYPHLAPKSRKKLVLELPFELSPTVESEEEE EQEIEMEVLNNNDDGNNNNNNDNHNNNRNHEDGHHNNNNDAQFVFIPHEKPLRDYSRPTLRGTTSSIQSPIIQAKLREFPDPGSDRVRRKVVDDLRAIKN NPLSRSISFAQRSAIVSLMLDLSFLSPGWFLRPRRKWEVTGRSSGRVPSSWEDDLQNYRSNP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021760 [exp]	0	1
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10024462 [exp]	3.6	0.8092
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10003752 [exp]	6.0	0.7526
					Lus10003753 [exp]	6.3	0.7867
AT4G20040			Pectin lyase-like superfamily ...		Lus10008700 [exp]	7.7	0.7867
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000682 [exp]	8.9	0.7867
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10032339 [exp]	10.0	0.7867
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10012763 [exp]	14.4	0.6246
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10010776 [exp]	14.7	0.7218
AT3G14460			LRR and NB-ARC domains-contain...		Lus10005321 [exp]	17.3	0.7121
AT3G27470			Protein of unknown function (D...		Lus10035228 [exp]	17.5	0.7428

Compare expression of checked genes

Lus10021760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.