Plant FIBer expression Database

Lus10021765 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26520 55 / 2e-10 unknown protein
AT3G57500 44 / 1e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032762
[exp]
129 / 1e-39 AT2G26520 81 / 3e-20 unknown protein
Lus10020993
[exp]
51 / 3e-09 AT2G26520 67 / 2e-15 unknown protein
Lus10023859
[exp]
50 / 6e-09 AT2G26520 66 / 5e-15 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G035400
[exp]
81 / 9e-21 AT2G26520 86 / 3e-22 unknown protein
Potri.009G106300
[exp]
64 / 4e-14 AT2G26520 77 / 4e-19 unknown protein
Potri.004G144400
[exp]
63 / 2e-13 AT2G26520 81 / 3e-20 unknown protein
Potri.006G052500
[exp]
46 / 3e-07 AT3G57500 68 / 7e-16 unknown protein
PFAM info
Representative CDS sequence
>Lus10021765 pacid=23154335 polypeptide=Lus10021765 locus=Lus10021765.g ID=Lus10021765.BGIv1.0 annot-version=v1.0
ATGCCTTTAGGGCAGCAGCAAGGACCACTGGTGAATGTTAACCCACAGTCATTCGCTGGCATCCACTCGTCATCCCACCCTTCGGTCGGACCTGTAATTG
CAGTGCTGGTGGTGATCATGATTATGGGAATTGCAGCAGTTATGATTGGAAGGATGTGTTCTGGGAGGAGGATACTGGGTTACGGCCAATACGACATTGA
AGGATGGGCTGAGACCAAGTGTTCAACTTGCATTGATGGAAGGATTACTCCTTCTCCTCCTCCTCCTCCGTCTGCTACTACTGCTCCTACTCCACCACTT
GGGGAAAGTGACAATGCCGCTTCTCACGACGACAATGATGATGAAGAGGAAGAAAGTGGAGCTAGTTCATCAGCCCCCTGA
AA sequence
>Lus10021765 pacid=23154335 polypeptide=Lus10021765 locus=Lus10021765.g ID=Lus10021765.BGIv1.0 annot-version=v1.0
MPLGQQQGPLVNVNPQSFAGIHSSSHPSVGPVIAVLVVIMIMGIAAVMIGRMCSGRRILGYGQYDIEGWAETKCSTCIDGRITPSPPPPPSATTAPTPPL
GESDNAASHDDNDDEEEESGASSSAP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G26520 unknown protein Lus10021765
[exp]
0 1
AT1G15910 FDM1 factor of DNA methylation 1, X... Lus10026076
[exp]
5.2 0.9507
AT2G26520 unknown protein Lus10032762
[exp]
5.3 0.9198
AT3G58530 RNI-like superfamily protein (... Lus10012294
[exp]
7.9 0.9385
Lus10006724
[exp]
8.2 0.9454
AT2G42840 PDF1 protodermal factor 1 (.1) Lus10007351
[exp]
10.2 0.9412
AT3G45980 H2B, HTB9 HISTONE H2B, Histone superfami... Lus10021408
[exp]
10.6 0.9381
AT5G04530 KCS19 3-ketoacyl-CoA synthase 19 (.1... Lus10040333
[exp]
11.6 0.9398
AT1G26680 B3 REM17 transcriptional factor B3 fami... Lus10026921
[exp]
13.1 0.9045
AT1G75240 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, hom... Lus10014302
[exp]
13.2 0.9386
AT2G47940 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP pr... Lus10005931
[exp]
13.4 0.9330

Lus10021765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.