Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66850 449 / 1e-146 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G53570 323 / 1e-99 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G63700 321 / 3e-96 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G09000 254 / 9e-74 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54960 253 / 1e-73 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT4G08500 238 / 5e-68 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT3G06030 236 / 6e-67 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G08470 229 / 1e-65 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT3G07980 226 / 4e-61 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT4G08480 219 / 2e-60 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032761 [exp] 1004 / 0 AT5G66850 303 / 8e-93 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10019635 [exp] 473 / 6e-156 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10009339 [exp] 466 / 1e-152 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10022461 [exp] 426 / 6e-132 AT5G66810 756 / 0.0 unknown protein Lus10016768 [exp] 393 / 2e-127 AT5G66850 460 / 3e-155 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10032279 [exp] 333 / 9e-101 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 330 / 4e-100 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 330 / 1e-99 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 317 / 8e-95 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129100 [exp] 493 / 4e-163 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 481 / 3e-158 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.007G039800 [exp] 442 / 9e-145 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G135100 [exp] 442 / 5e-144 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.012G143900 [exp] 332 / 8e-100 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 331 / 1e-99 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 330 / 2e-99 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.007G106800 [exp] 319 / 6e-98 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.003G129000 [exp] 325 / 2e-97 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.005G062500 [exp] 316 / 8e-97 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021766 pacid=23154316 polypeptide=Lus10021766 locus=Lus10021766.g ID=Lus10021766.BGIv1.0 annot-version=v1.0 ATGGCGAGAGACGACGACGACGAGTCCTCTTCGGCTCTCCGGCCGGACGATTCCAACTTCCTACTGGACGATGAAGAACTTGGAGCCAAGGGGTCGCCGG GGAAAAACTCTAAGAAGAAGAAGAAGCAGCAGCAGGTAGTGAGAAGACGAGTTGGGCTTTCGATGGATTTCACCAATTCATCTCCTCAACTGCCGAATTT CGATTCTCTGCCTCTTCCAACCCGGAATTCGAGTGGGAATCCAATACCACAACGTGGACGGTCTTTTACCCAGAAGAGGCTTACCCGGCAGAAGAAGCTG CGGCACCTCAACGACTGTCAGCTCGACAAGATGTTGGCTGAACGGCGTTCGAGTTCTCAGCCGGTTTCGCCGGAGTCATCCTCGCAAAAGCCGCCGTCTC CGGGCGACGGGTCGGGTAACTCGTCGTGGCGGTATTTCCCGGTACCCCAACCGTTACCGTTGCCGCGGCGAAATTTGCACAGGAGGCTACAATCCGCTGG GTCTAATTGGGGCCACCAACTAACCGGGTCGCCGGTAGATGGCCCGTTCTCTTCTTCCAGAAGAAAGGTCCGGTACTTCAGTGAACAAGAGATCGTCTCT CGTGGTCGTTTGCTCTCGCCGCCACCGTCGCCGGATTTTATTGCGGGGACGTCCCCAGAAAAGTCGGACCGTCGTTCTCTATCACCGTTACCCCAGCCAT TGCCGCTTCCTGATTCGTCATTGAATAGAAGGCCTGAGTCTCCAGCTCATCATATATTGGGATCTGATCTTCTCCGATCACTGGATTGTGGCGGGAAACG GTCCTATTCAAGGAAGAACAGCAGTGATCAGAATGAGATCGCCACAAAGCCAGCGATAAAACCTCTGAGCAATTGCCAAGAAAGCGGAGGAAGTACGGCT ATTAACTCCATCCCGAGTTCCTTACCGAGATGTTCATCCACGAGTTGCTTCGCAAACCTCTTCCCTTCTTCTCGGCTCCCCGCAGCAGAATCTTCTAAAT CTTTGAGCAGCCGTCGTAAGGACCTTCCTAAAGATCTGACTATCTGCCTTTCCTGCAAAAATGGTGCAGTTCAGTCTCCACAGAGTACTTCATCGGGAAG CGGTTGCCCCAGTCAAGCTGTCAGCCCACAGAGATCACCAACTCCTCTTGGAAATCAATGTGTTGACGAAGTTCATTTTCGTCCTGATTTTGAGATTCCA GACTTTAGGTTATCTGGTAATAGCTCACCATCGTCCTTAGTGAAACATGCGCAGCAATGTAGTCGTGATATTTCCCCACTCCATAGCCTAACTTTACCAA GTGCTTTCTCCAACCCAAGAAGTCCAACTATATCTGCACGGCATCAAAGCAAATCAGGTCCTTTGAGTTCTAAAGATTCCCCTGAAAGCAGCAATCAGCT CAATCCTTACCCATTGCCCTTACCTCCTTTGGTTATATCTCCAACACAGTCGCGTATCCCATCTCCATTGCTATCACCTGTTACCCATACTAGATTAGAA AATGTACCGACGTCGATGAAAAGGAATCAATGGCAGAAAGGCAAGCTTATTGGTCGTGGCACATATGGAAGTGTTTATGTGGGGACTCACAGAGAGACTG GAGCTCTGTGTGCAATCAAGGAAGTGGACCTTATCCATGACGATCCTAAATCGGACGAATGTGTAAGGCAATTAGAGCAGGAAATTAAAGTTCTCCGACA TCTAAAGCATCCTAACATAGTCCAGTATCTTGGCAGTGAGACAGTTGAAAATCACTTCAACATATATCTAGAGTATGTTCATCCTGGCTCGATAAGCAAA TATGTCCAGGAACACTGTGGAGCTATTACAGAATCAATAGTCCGCAACTTCACCCGTCACATTCTCTCCGGACTGGCTTTTTTGCACCGGACAAAGACCA TCCATAGGGATATCAAAGGTGCAAATTTGTTAGTTGATGCATCAGGTACAGTTAAGCTTGCAGATTTTGGGATGGCAAAACATCTCGCAGGCATCTCATA TCAACTGTCTCTGAAAGGAAGTCCACATTGGATGGCTCCAGAGGTCATACAAGCTGTGATGCAAAAAGACGGTAATCCTGATCTTGCTTTTGCGGTTGAT ATATGGAGCATGGGTTGTACTGTGATTGAGATGTTCACTGGTAAACCTCCCTGGGGTGAACTTCAAGGGCCTCAGGCCATGTTCAAGGTGTTGAACAAAT CTCCTCCAATTCCAGATGCACTGTCCTCAGAGGGGAAAGACTTCCTTTCCTGCTGTTTTCGTAGGAATCCGGCTGATAGGCCAACTGCTCATCAGCTGCT TGAACATCCTTTCGTGCGAAGTTCAAGTGATGTTAATGCAGCTCCAGCTCCAGCTCTTCCATTGCGGGATTTCTCGACGACGAGTCACCGAGAATACATT GAAACATTCAGCTGTGGGTTAGGTTCTCATGAGTTACTCTCCCCAACACATGTCCTGCAGAATTCACACGATTACTTTGGTTCTTCAAACATGGCCAACA ATATTTCAATGAATGCTATGAGCAACCATCCTTTGTCCATTTTACGAAGTCATGGCAAGGAGGCTTCCTACATGTGA
AA sequence Show only first row Show all	>Lus10021766 pacid=23154316 polypeptide=Lus10021766 locus=Lus10021766.g ID=Lus10021766.BGIv1.0 annot-version=v1.0 MARDDDDESSSALRPDDSNFLLDDEELGAKGSPGKNSKKKKKQQQVVRRRVGLSMDFTNSSPQLPNFDSLPLPTRNSSGNPIPQRGRSFTQKRLTRQKKL RHLNDCQLDKMLAERRSSSQPVSPESSSQKPPSPGDGSGNSSWRYFPVPQPLPLPRRNLHRRLQSAGSNWGHQLTGSPVDGPFSSSRRKVRYFSEQEIVS RGRLLSPPPSPDFIAGTSPEKSDRRSLSPLPQPLPLPDSSLNRRPESPAHHILGSDLLRSLDCGGKRSYSRKNSSDQNEIATKPAIKPLSNCQESGGSTA INSIPSSLPRCSSTSCFANLFPSSRLPAAESSKSLSSRRKDLPKDLTICLSCKNGAVQSPQSTSSGSGCPSQAVSPQRSPTPLGNQCVDEVHFRPDFEIP DFRLSGNSSPSSLVKHAQQCSRDISPLHSLTLPSAFSNPRSPTISARHQSKSGPLSSKDSPESSNQLNPYPLPLPPLVISPTQSRIPSPLLSPVTHTRLE NVPTSMKRNQWQKGKLIGRGTYGSVYVGTHRETGALCAIKEVDLIHDDPKSDECVRQLEQEIKVLRHLKHPNIVQYLGSETVENHFNIYLEYVHPGSISK YVQEHCGAITESIVRNFTRHILSGLAFLHRTKTIHRDIKGANLLVDASGTVKLADFGMAKHLAGISYQLSLKGSPHWMAPEVIQAVMQKDGNPDLAFAVD IWSMGCTVIEMFTGKPPWGELQGPQAMFKVLNKSPPIPDALSSEGKDFLSCCFRRNPADRPTAHQLLEHPFVRSSSDVNAAPAPALPLRDFSTTSHREYI ETFSCGLGSHELLSPTHVLQNSHDYFGSSNMANNISMNAMSNHPLSILRSHGKEASYM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10021766 [exp]	0	1
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10032761 [exp]	1.0	0.8598
AT1G78910			Pseudouridine synthase family ...		Lus10033350 [exp]	4.5	0.8223
AT5G41980			unknown protein		Lus10024452 [exp]	5.5	0.8079
AT1G03560			Pentatricopeptide repeat (PPR-...		Lus10018567 [exp]	7.7	0.7633
AT5G45760			Transducin/WD40 repeat-like su...		Lus10007297 [exp]	8.1	0.7864
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10013775 [exp]	9.2	0.7826
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10030467 [exp]	9.6	0.7690
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10012885 [exp]	10.2	0.8000
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10024026 [exp]	11.0	0.8179
AT1G78010			tRNA modification GTPase, puta...		Lus10029578 [exp]	11.3	0.8130

Compare expression of checked genes

Lus10021766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.