Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44785 124 / 1e-31 OSB3 organellar single-stranded DNA binding protein 3 (.1.2) AT1G47720 107 / 1e-26 OSB1 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) AT4G20010 92 / 2e-20 PTAC9, OSB2 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2) AT1G31010 88 / 4e-19 OSB4 organellar single-stranded DNA binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032760 [exp] 380 / 9e-133 AT1G47720 74 / 2e-15 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10014728 [exp] 97 / 2e-22 AT1G47720 106 / 3e-27 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10018763 [exp] 91 / 3e-20 AT1G47720 109 / 3e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10024852 [exp] 87 / 3e-19 AT1G47720 110 / 2e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10002722 [exp] 55 / 3e-08 AT5G44785 57 / 2e-09 organellar single-stranded DNA binding protein 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G035600 [exp] 278 / 5e-91 AT1G47720 158 / 6e-46 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.001G394200 [exp] 116 / 4e-29 AT4G20010 269 / 7e-88 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2) Potri.005G218100 [exp] 109 / 3e-27 AT1G47720 114 / 6e-30 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.002G045100 [exp] 96 / 2e-22 AT1G47720 112 / 2e-29 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.002G129166 [exp] 77 / 4e-16 AT1G47720 84 / 2e-19 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00436 [flax] [poplar] SSB Single-strand binding protein family
Representative CDS sequence Show only first row Show all	>Lus10021767 pacid=23154301 polypeptide=Lus10021767 locus=Lus10021767.g ID=Lus10021767.BGIv1.0 annot-version=v1.0 ATGTACTGTTACAGTTGGCGTTCATTCATGATCAAGCCGCGCCAACTCCGCTCCCTTCTCAGGGATGTCTCTCGATTCTCCATCCAAAACCTAGCCGCTT TTTCCTCTTGGCCCGCTGCCAACCCTAGGTCGCCTAATTTCTCTACCGATGAGGATGATTCTGGAGACCGCCGCAGCGAAGTTCTTCGACGAGCCGTCAC TAGCCGGCGGCCAGCCACCGTGAGATGGACTCCTCGTTTGGCTAATTCCCTTCAATTGATTGGCTCCGTCGAGCGTCCTGTGGAGACCTTAAAAACCAAA CATGGCGGGTTTGGAGTTTACACTACACTCCGAGTGAAGAATCCCAAGGGTTCCAAGCAGCTCACTTACACGATTATGTTATTGGCTTGGGAAGACCTGG CAGAAATATGCATTAATCATGTGAAGCCTGGTGATTTTATCTATGTTTCAGGTATCTTGGGATTCTACGATAATAAAGATGATTACGGTTCACAGCACAA GATAACTGCGAAAGAATTGAATTTCGTTGATGTTTCATTGTATGGAAGTCACCCTAATGCAAGAAAAGCAGATGTGTCTGATTCGGAAGGCCTTAAACAG AATGACGAACCCGTAGCAGCTGGTTCTGGGTTGAACCTAGCTGGCTGCTTGAATTGGGTCCATTCTTTCGCATTTGTTTCCCTTTCCCTCTTTATCTGTT CTTATTTTATGCATACTGTTGGTCAATTATTAGGTCAAGCTGAAATGCAAGTCTACCAAAACCATCTTTGGCAAGCATTCTTTTCTAACCCAGATAGATG GAGGGATGAGCGGACAAGCAAGAAGCAGCAATGGTCCCCTGATTTTGTTCACAAGGATAGCCGTGAAGGACTGTGGCTGAGAGAGGATGTTCCATCTTGG GTGAAAACTGAGCTCCAGCTCCTTGATTCAAATAAGCCAAGGAATGGAACTCACAAGAATGACCTCTACTTGTGGCAAGTGTTTTTCCGAAACCCCCACG AGTGGTGGGATAACCGGAGGAGTAAGAAGAACCCGAAAAGGCCCGATTTTAAACACAAAGATACCGGTGAGGCTCTCTGGCTCGATCCAGATGGTCCACA ATGGATCAGAAGACAGCTCGAACTGTTTGACGAATCCACACCAGGTGTATAA
AA sequence Show only first row Show all	>Lus10021767 pacid=23154301 polypeptide=Lus10021767 locus=Lus10021767.g ID=Lus10021767.BGIv1.0 annot-version=v1.0 MYCYSWRSFMIKPRQLRSLLRDVSRFSIQNLAAFSSWPAANPRSPNFSTDEDDSGDRRSEVLRRAVTSRRPATVRWTPRLANSLQLIGSVERPVETLKTK HGGFGVYTTLRVKNPKGSKQLTYTIMLLAWEDLAEICINHVKPGDFIYVSGILGFYDNKDDYGSQHKITAKELNFVDVSLYGSHPNARKADVSDSEGLKQ NDEPVAAGSGLNLAGCLNWVHSFAFVSLSLFICSYFMHTVGQLLGQAEMQVYQNHLWQAFFSNPDRWRDERTSKKQQWSPDFVHKDSREGLWLREDVPSW VKTELQLLDSNKPRNGTHKNDLYLWQVFFRNPHEWWDNRRSKKNPKRPDFKHKDTGEALWLDPDGPQWIRRQLELFDESTPGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10021767 [exp]	0	1
AT3G50000		ATCKA2, CKA2	"casein kinase II, alpha chain...		Lus10011534 [exp]	1.4	0.9122
AT3G47610			transcription regulators;zinc ...		Lus10023596 [exp]	2.4	0.9076
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10041732 [exp]	4.7	0.8880
AT1G04300			TRAF-like superfamily protein ...		Lus10022207 [exp]	9.0	0.9046
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	9.1	0.9177
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Lus10006281 [exp]	12.6	0.8920
AT1G27900			RNA helicase family protein (....		Lus10015812 [exp]	13.0	0.9018
AT3G51500			unknown protein		Lus10014816 [exp]	13.8	0.8783
AT5G54850			unknown protein		Lus10011150 [exp]	14.3	0.9070
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10010521 [exp]	14.8	0.8725

Compare expression of checked genes

Lus10021767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.