Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19610 1661 / 0 GNL2 GNOM-like 2 (.1) AT1G13980 952 / 0 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) AT5G39500 866 / 0 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1) AT1G01960 219 / 1e-57 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1) AT4G38200 205 / 4e-53 SEC7-like guanine nucleotide exchange family protein (.1) AT3G60860 202 / 3e-52 SEC7-like guanine nucleotide exchange family protein (.1) AT4G35380 189 / 4e-48 SEC7-like guanine nucleotide exchange family protein (.1) AT3G43300 171 / 1e-42 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034615 [exp] 2302 / 0 AT5G19610 1647 / 0.0 GNOM-like 2 (.1) Lus10026627 [exp] 978 / 0 AT1G13980 2395 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10030432 [exp] 972 / 0 AT1G13980 2383 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10036789 [exp] 947 / 0 AT1G13980 2300 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10037140 [exp] 927 / 0 AT1G13980 2274 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10009300 [exp] 221 / 5e-58 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10015863 [exp] 194 / 2e-49 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10022983 [exp] 189 / 4e-48 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10038084 [exp] 181 / 2e-45 AT3G43300 2350 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G075300 [exp] 1795 / 0 AT5G19610 1796 / 0.0 GNOM-like 2 (.1) Potri.017G078900 [exp] 947 / 0 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.017G078800 [exp] 731 / 0 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.014G070600 [exp] 225 / 3e-59 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.002G149200 [exp] 223 / 1e-58 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.009G169800 [exp] 203 / 2e-52 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.004G208400 [exp] 202 / 2e-52 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.006G216900 [exp] 179 / 3e-45 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01369 [flax] [poplar] Sec7 Sec7 domain
Representative CDS sequence Show only first row Show all	>Lus10021771 pacid=23159302 polypeptide=Lus10021771 locus=Lus10021771.g ID=Lus10021771.BGIv1.0 annot-version=v1.0 ATGGAGGGAACGGAAGCAGACGAAGAAGGAAACAACAAGTACACGTCATCAACAAACAAGAAGAGCAGCAAGAAGAAGAGGATTGAGCTAGGGATCTCAT GTATGCTCAACACCGAGGTCGCCTCCGTCCTCGCCGTCCTCCGTCGCCCGCCGCCCGATCCCACGTCGGCGCAATTCCTTTCCCAAGAGGATCAGTACGA CACCGCCCTCGTCCACTCTTTCAAATCCCTCCGTACCTTAATTTTCAACCCTCCTCAGGACTGGCAGACCATGGACCCCGCCGTCTACCTCACGCCGTTC CTCGACGTCATTCAATCCGACGAGATTCCCTCTGCTGCTACCTCCATCGCTCTCTACTCCGTCCTTAAGCTCCTCAGCGTTGGAATCTTCGACGATCGGA CCACCGGAGCAAGGGACGCCATCAACTCCGTCGTCATGGGGATCACCGGATGCCGATTGGAAAGGACGGATCCCGTCTCGGAAGACGCCGTTATGATGCG GATCCTCCAAATCTTGACGGCGATCATGAAGCATCAGGCCGCCATTCTATTAACGGATCAGGCCGTGTGTACGGTGGTCAACACTTGTTTCCAGGTGGTT CAGCAATCGGCGAGTAGAGGGGATTTGCTTCAACGGAGTGCTAGGTATACGATGCACGAATTGGTCCGTATGATTTTTGCGAAATTGCAGGATATTGAGG TAAACCCTGGGGAGGAATCCGATACGGACATGGACGATGCCGATTTCGACGGGAATTTGGATTCAGGGTATGGAATTCGTTGCGCTGTTGATATCTTCCA TTTCTTGTGTTCGTTGCTCAATGTTGTGGAAGTTGTGGAGAGTGAAGGGAATTTGTATCGTACTTCTGATGAGGATGTTCAGCTTTTTGCATTGGTTTTG ATCAATTCGGCCTTCGAGTTGAGTGGAGACGTGATTGGAAGTCACCCCAAGCTTCTTCGGATGATCCAAGACGATTTGTTCCATCATTTAATCCATTATG GAGCACCTTCCAGCCCCCTCATTTTGTCTATGATCTGTAGTACAGTTTTGAACATATACCATTTCCTTCGCAGGTTTGTTCGTTTTCAACTTGAGGCATT CTTCAAGTACGTGTTGTTGAGAGTAGCAGCAAATGGAGTTTCAACTCAGCTTCAAGAAGTTGCACTTGAAGGAATCATAGATTTTTGTAGGCAGCCAACT TTTATCATTGAAGCATATGTGAACTATGACTGTGATCCACTATGCATTAACATGTTTGAGGAAACTGCAAAGTTGCTCTGCAAGCTTTCATTTCCAGGAG CCAGTCCTGCAACGTCATTACAAGCTCAAGCATTTGAAGGTCTAGTTGGGATCATTCACAACATAGCTGAGAACATCAACAGAGAAGGCGATTCCACGCC TTCTGGACCGTACCCAGTTCACTTGACGGAGTACAGTAAGTTCTGGCAAGACAGACCCTTGGAGAATAACGATGCATCTGTAGCATATATGAGGATAAGA AAAGCACAAAAGAGGAAAATTTTGATTGCTTCAAACCATTACTCTAGAGATGAGAAGAAAGGGTTGGAGTATTTGAGGCTAAGTTTGATGTTTCCTAATC CTCCAGATCCTAAAGATTTTGCTTTCTTCTTTCGATTCACGCCGGGGTTAGACAAGACTATGATTGGAGATTACTTGGGTGATCCTGATGAGTTCCACAT TCAAGTTCTGAAAGAGTTCAGTTGTACTTTTGGGTTCTCAGGAATGGTTCTTGACACTGCTCTCCGTACTTATCTTGCCACCTTTAGGTTGCCCGGAGAG TCCCAAAAAATCCAGAGAATAATGGAAGCTTTCTCGGATCAATTCTATGAGCAACAATCTTCTGATATTTTCGCAAGTAAAGATGCAGTTTTCGTCCTTT GTTACTCTCTCATTATGCTCAATACTGACCAGCACAATCCTCAGGTCAAGAAGAAGATGACAGAGGAAGAGTTCATCAGGAACAATAGGGCTATCAATGC TGGACAGGATCTTCCTAGGGAGTATCTCTCCGAGCTTTTCCAATCGATATCATCTAAAGCAATTGCACTGTTTGGGCAAACCGGTCAGCAAGAGATGAAT CCCGGACTGTGGATAGAGCTGATGGGTGCTTCCAGGTATTTGCAACCCTTCACTCTTTACGATTTCGACCGTCGTCTCGGGAGGGATATGTTTGCGTCTG TTGCTGGTCCAGCAGTTGCAGCCCTCACAGCATTTTTCGAGCAATCTGATGAGGATGAAATGTTCCACGAATGTGTTGAAGCATTAATTTCGGTAGCCAG AATAGTACAGTATGGCCTGGAAGATACCCTGGATGAGATGCTTGCCTCATTGTGTAAATGTACCACACTTCTGAATCCTTATGCATCGGCAGAAGAGACA TTGTTTGCCTTTAGCCATGATCTGAAGCCCAGAATGGCTGTACTTGTAGTCTTCAGCATTGCGAATAATTTCGGCTGTGGGATTCGAGGAGCGTGGAGGC CAATCTTGGACTGTCTGTTGAAGCTAAAAAAGCTCAAGTTGCTTCCTTCTTCTGTAGTTGAGCTAGACAATTCCTTTGCACCTTCCATTGATTCATCCTC TGACCATTCTAGAAACGACGGTGGCTTAATTTTCCCTTCTCATGAATCAAGATCAGGTGGCGGCAGAAATCGCCAGAGCTCAACCATGATAGGAAGTTTC TCTCATTTCTTGTCTCTTGACAGTATGGAAGAATCCTTGTCTCTCGGGCTGAACGAATTCGAGCAGAATCAGAAAGTTATCAAGCAGTGTCAGATTGGGA GCATATTCACCAACAGCTGGAACTTGCCTGACGAAACTCTAGCATATCTAGGCCGTACTCTGATCTTTGCATCAGCAGGAAAAGGGCAGAAGTTTGCGAC GCCGATCGAGGAAGAAGAAACCATAGAATTCTGTTGGGATTTGATAGTTGCTCTATCTTTTGCCAACATTAACCGGTTACATAACTTCTGGCCAGCCTAC CATGAAAACTTGTTTGAAGCTATTCACTTTCCTCTATTCTCCTCAATCCCATTTGCCGAGAAGGTCGTAAGTGCCCTCTTCAGGATCTGCCTCAAGCTAC TCTCATCTGCCAGACTAGAGAAACTGCCAGAGGAACTCATCTTCAAATCCATCAACATGATGTGGCAAATAGAGAAGCAGATTCTAGACACATGTTGTGA ATCCATAACAAAGTCAGTCAGCATGATTTTGTTTGAATACCCAGCAAATCTGCAGAGCTTCCTGGGTTGGAAAACAGTCCTCCATCTCTTATCCGTCTCT GGACGCCATCAGGAAACCTACGATCAGGGAGTCGAGACGCTTATCATGCTCATTTCTGACCAAACTCTGAACATTCTGGACCTTCTAGCGGAATCGGTCA GCTTGCAAATCCATTGGTATAAAAACTTCTCAGACCCTGGTAGCAATTTCAGTGCAACAAGCACAGGAAGCAATAACTTTTTCCAGGATGCGACTTCGTT TTCGGTCAGCTTATTCCTGAAATTAGGAGAAGCCTTCAGGAAAACCAGCTTGGCAAGACGAGAGGAAATCAGGAACCATGCCATCAAGTCTCTTCAGAAG AGCTTTTCCTTAGCAGAGGAGTTGGATTTCACGCCTGCCAACTGTCTAAACTTGTTCAACCTAGTGGTATTTGCCATGGTCGACGATCTGCACGAAAAGC TGATAGAATACTCGAGGCGAGAAGGGGCGGAGAGGGAGATGAGGAGTATGGAAGGGACTTTGAGCTTGGCGATGGAACTTATGACCGAGGTTTATCTACA GTTCCTGAAGCCAATAGCGTCGAGCCCTGGGTTCAGAACATTCTGGTTGGGTGTGTTGAGAAGGATGGATACATGTATGAAAGCTGATCTTGGGGAGTAT GGTGAGACCAAGTTGCAGGAGGTGATTCCAGGTCTCTTGAAGAAAATGATTATTAAGATGAAAGAAGATGAAATTTTGGTACAGAAGGAAGATGATGATC TGTTTGAAATCACTTACATTCAAATTCAGTGGATTGCTCCTTCCTTGAAGGAAGAACTTTTTCCTGAATTGGAAATTTAG
AA sequence Show only first row Show all	>Lus10021771 pacid=23159302 polypeptide=Lus10021771 locus=Lus10021771.g ID=Lus10021771.BGIv1.0 annot-version=v1.0 MEGTEADEEGNNKYTSSTNKKSSKKKRIELGISCMLNTEVASVLAVLRRPPPDPTSAQFLSQEDQYDTALVHSFKSLRTLIFNPPQDWQTMDPAVYLTPF LDVIQSDEIPSAATSIALYSVLKLLSVGIFDDRTTGARDAINSVVMGITGCRLERTDPVSEDAVMMRILQILTAIMKHQAAILLTDQAVCTVVNTCFQVV QQSASRGDLLQRSARYTMHELVRMIFAKLQDIEVNPGEESDTDMDDADFDGNLDSGYGIRCAVDIFHFLCSLLNVVEVVESEGNLYRTSDEDVQLFALVL INSAFELSGDVIGSHPKLLRMIQDDLFHHLIHYGAPSSPLILSMICSTVLNIYHFLRRFVRFQLEAFFKYVLLRVAANGVSTQLQEVALEGIIDFCRQPT FIIEAYVNYDCDPLCINMFEETAKLLCKLSFPGASPATSLQAQAFEGLVGIIHNIAENINREGDSTPSGPYPVHLTEYSKFWQDRPLENNDASVAYMRIR KAQKRKILIASNHYSRDEKKGLEYLRLSLMFPNPPDPKDFAFFFRFTPGLDKTMIGDYLGDPDEFHIQVLKEFSCTFGFSGMVLDTALRTYLATFRLPGE SQKIQRIMEAFSDQFYEQQSSDIFASKDAVFVLCYSLIMLNTDQHNPQVKKKMTEEEFIRNNRAINAGQDLPREYLSELFQSISSKAIALFGQTGQQEMN PGLWIELMGASRYLQPFTLYDFDRRLGRDMFASVAGPAVAALTAFFEQSDEDEMFHECVEALISVARIVQYGLEDTLDEMLASLCKCTTLLNPYASAEET LFAFSHDLKPRMAVLVVFSIANNFGCGIRGAWRPILDCLLKLKKLKLLPSSVVELDNSFAPSIDSSSDHSRNDGGLIFPSHESRSGGGRNRQSSTMIGSF SHFLSLDSMEESLSLGLNEFEQNQKVIKQCQIGSIFTNSWNLPDETLAYLGRTLIFASAGKGQKFATPIEEEETIEFCWDLIVALSFANINRLHNFWPAY HENLFEAIHFPLFSSIPFAEKVVSALFRICLKLLSSARLEKLPEELIFKSINMMWQIEKQILDTCCESITKSVSMILFEYPANLQSFLGWKTVLHLLSVS GRHQETYDQGVETLIMLISDQTLNILDLLAESVSLQIHWYKNFSDPGSNFSATSTGSNNFFQDATSFSVSLFLKLGEAFRKTSLARREEIRNHAIKSLQK SFSLAEELDFTPANCLNLFNLVVFAMVDDLHEKLIEYSRREGAEREMRSMEGTLSLAMELMTEVYLQFLKPIASSPGFRTFWLGVLRRMDTCMKADLGEY GETKLQEVIPGLLKKMIIKMKEDEILVQKEDDDLFEITYIQIQWIAPSLKEELFPELEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19610		GNL2	GNOM-like 2 (.1)		Lus10021771 [exp]	0	1
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Lus10005022 [exp]	4.7	0.7478
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	4.8	0.7867
AT1G19715			Mannose-binding lectin superfa...		Lus10024291 [exp]	13.1	0.7176
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Lus10019041 [exp]	21.7	0.6823
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10010973 [exp]	23.2	0.6982
					Lus10040028 [exp]	23.6	0.6784
AT5G42905			Polynucleotidyl transferase, r...		Lus10005922 [exp]	23.7	0.6756
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033208 [exp]	25.3	0.6859
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	28.4	0.6853
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10039883 [exp]	32.2	0.6813

Compare expression of checked genes

Lus10021771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.