Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23170 519 / 5e-179 Protein of unknown function DUF2359, transmembrane (.1.2) AT1G70770 508 / 7e-175 Protein of unknown function DUF2359, transmembrane (.1.2) AT3G11880 333 / 5e-109 Protein of unknown function DUF2359, transmembrane (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034590 [exp] 875 / 0 AT1G23170 616 / 0.0 Protein of unknown function DUF2359, transmembrane (.1.2) Lus10001593 [exp] 691 / 0 AT1G70770 615 / 0.0 Protein of unknown function DUF2359, transmembrane (.1.2) Lus10003709 [exp] 682 / 0 AT1G70770 614 / 0.0 Protein of unknown function DUF2359, transmembrane (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G110500 [exp] 584 / 0 AT1G23170 529 / 0.0 Protein of unknown function DUF2359, transmembrane (.1.2) Potri.017G124300 [exp] 543 / 0 AT1G23170 507 / 5e-174 Protein of unknown function DUF2359, transmembrane (.1.2) Potri.004G091100 [exp] 541 / 0 AT1G23170 508 / 5e-174 Protein of unknown function DUF2359, transmembrane (.1.2) Potri.008G131800 [exp] 501 / 2e-174 AT1G23170 466 / 5e-161 Protein of unknown function DUF2359, transmembrane (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10151 [flax] [poplar] TMEM214 TMEM214, C-terminal, caspase 4 activator
Representative CDS sequence Show only first row Show all	>Lus10021774 pacid=23159329 polypeptide=Lus10021774 locus=Lus10021774.g ID=Lus10021774.BGIv1.0 annot-version=v1.0 ATGGACTCTTATGAATCCTACGCCAACACGTACCAGCACATCGGCGCCGACGCCGCCGCCGAGTCTGCCAATCCGGATCACGGCTGGCAGAAGAAGCGCC CCGGGGCGGCGGCCAGCAACGACAAAGGGAACGTGTTTCTCTCTCTCGAGCAGCAGTCGGAGGATCGCCGCCGGAGGATTTTGGAATCGGCTGCAAGTGC TGCCGTCGCTGCCACCGCCAACGCCGGGAGATCAAAGGACCGATCTGACGATGATGGCGATGACGATAGCGACGATGCTAGGGTTGGGAAAGGGAATGAG AATGGCGAGGTGGAGAAGAAGGTGAAGGTGAAGAAGCCTAAGAAGCCCAAGATCACCGTTTCTGATGCCGCTGCTAAGATCGACGACTCCGATCTCTCTG CTTTTCTCGCGGATATCTCTGTTTCTTACGAGGGGCAGCAGGAGATACAGCTGATGAGATTCGCTGATTATTTTGGGAGGGCATTCTCGGCTGTGAGTTC AGCTCAATTCCCGTGGGTGAAGCTGTTGAGGGAGAATCCTCAGGCCAAAATTGCGGATATTCCTCTATTGTACATTTCGGAACCTGTGCATAAAACATCA GTTGACTGGATTTCTCAACGCTCTGTGGAGGCACTTGGGTCCTTTCTTCTATGGGGTCTAGACAGTATCCTTGCGGATTTGGCGATCCAGCTACCTGGTC CAAAAGCCGCCAAGAAGGGTGCGCAACAAGCATCATCAAAGTCCCAGGTTGCCATCTTTGTGGTGCTGGCAATGGTCTTGCGACGGAAACCTGACTCCTT GATTAACGTATTGCCTACGTTGAAGGAAAGTGCAAAGTATCAGGGGCAAGACAAGCTTCCAGTTATTGCATGGATGATAACACAAGCCTCACAAGCAGAT TTGGCTGTTGGGTTGTTCTCATGGGCACGTATCCTTTTGCCCTTAGTGAGTGGGAAGAGTAATAATCCACAGTCAAGGGATATTATATTGCAACTTGTGG AGAAGATTTTGGCAGCTCCAAAAGCTAGGACAATTTTAGTAAATGGTGCTGTTAGAAAAGGGGAACGTCTGGTTCCGCCATCTGCATTGGAGGTGTTGAT GAGAGTTTCCTTTCCTATGTCTTCGGCTAGAGTAAAGGCTACAGAGAGGTTTGAAGCAATATATGCTACCCTCAAGGAGGTGGCTCTTGCTGGTTCTACT GGAAGTAAAGCCATGAGGCAAGTAGCCCTCCAGACATTCAGCTTCTCTCTGCAAGCGGCTGGTGAAAGCAATCAACAGTTGTCCAAGGAAGCTGCTGGCA TTTCGATCTGGTGTTTCACGCAAAATCCTGAGTGCTACAAGCAGTGGGTTAAGGTGTATCCGGACGATCTACGAGCCAGTGTCGCTCTCCTTAAAAGGCT TTCTGAGGAATGGAAGGACCTTTCGCAGAAACTAACTCCTTTCAACCCTCTCAGGGAGACTATAAGAGATTTCAGGAAAAAGAATGAGAAAGCAGTGGCG GCCAAAGGGCACAAGGATGCAGACTTACCACTGTACAAAGAAGCAGACAAGTACTGCAAGGCAATCCAAGGGAAGCTATCTAGCGGACATGGCTGCTTGA AAGGTATGGCCTTTGCTGTCGTTGCGTTGGCAATCGGTGCTGCTGTGGCGTCCCCGAACTTGGAGAGGGGTTGGGACTGGAATGAAGTCTCTGTATACGT CAACTCTCAACTGTCTTCACTTAAGTTAGCTGCTTCCCTTTGA
AA sequence Show only first row Show all	>Lus10021774 pacid=23159329 polypeptide=Lus10021774 locus=Lus10021774.g ID=Lus10021774.BGIv1.0 annot-version=v1.0 MDSYESYANTYQHIGADAAAESANPDHGWQKKRPGAAASNDKGNVFLSLEQQSEDRRRRILESAASAAVAATANAGRSKDRSDDDGDDDSDDARVGKGNE NGEVEKKVKVKKPKKPKITVSDAAAKIDDSDLSAFLADISVSYEGQQEIQLMRFADYFGRAFSAVSSAQFPWVKLLRENPQAKIADIPLLYISEPVHKTS VDWISQRSVEALGSFLLWGLDSILADLAIQLPGPKAAKKGAQQASSKSQVAIFVVLAMVLRRKPDSLINVLPTLKESAKYQGQDKLPVIAWMITQASQAD LAVGLFSWARILLPLVSGKSNNPQSRDIILQLVEKILAAPKARTILVNGAVRKGERLVPPSALEVLMRVSFPMSSARVKATERFEAIYATLKEVALAGST GSKAMRQVALQTFSFSLQAAGESNQQLSKEAAGISIWCFTQNPECYKQWVKVYPDDLRASVALLKRLSEEWKDLSQKLTPFNPLRETIRDFRKKNEKAVA AKGHKDADLPLYKEADKYCKAIQGKLSSGHGCLKGMAFAVVALAIGAAVASPNLERGWDWNEVSVYVNSQLSSLKLAASL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23170			Protein of unknown function DU...		Lus10021774 [exp]	0	1
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10014393 [exp]	1.7	0.9410
AT3G01840			Protein kinase superfamily pro...		Lus10041574 [exp]	2.8	0.9574
AT1G21480			Exostosin family protein (.1.2...		Lus10028632 [exp]	3.2	0.9357
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10005680 [exp]	4.5	0.9359
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10013871 [exp]	7.3	0.9425
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10006633 [exp]	9.2	0.9282
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002074 [exp]	10.3	0.9130
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10033796 [exp]	12.4	0.9316
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Lus10001518 [exp]	15.2	0.9192
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Lus10007885 [exp]	15.7	0.9147

Compare expression of checked genes

Lus10021774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.