Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24500 202 / 8e-68 MBF1C, ATMBF1C multiprotein bridging factor 1C (.1.2) AT3G58680 143 / 9e-45 MBF1B, ATMBF1B multiprotein bridging factor 1B (.1) AT2G42680 133 / 7e-41 MBF1A, ATMBF1A ARABIDOPSIS THALIANA MULTIPROTEIN BRIDGING FACTOR 1A, multiprotein bridging factor 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034592 [exp] 278 / 9e-98 AT3G24500 201 / 1e-67 multiprotein bridging factor 1C (.1.2) Lus10013686 [exp] 147 / 2e-46 AT3G58680 224 / 5e-77 multiprotein bridging factor 1B (.1) Lus10017945 [exp] 147 / 2e-46 AT3G58680 224 / 5e-77 multiprotein bridging factor 1B (.1) Lus10016756 [exp] 102 / 5e-29 AT3G24500 65 / 5e-15 multiprotein bridging factor 1C (.1.2) Lus10000056 [exp] 71 / 4e-17 AT2G42680 100 / 3e-29 ARABIDOPSIS THALIANA MULTIPROTEIN BRIDGING FACTOR 1A, multiprotein bridging factor 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G075200 [exp] 219 / 9e-75 AT3G24500 223 / 4e-76 multiprotein bridging factor 1C (.1.2) Potri.001G390400 [exp] 144 / 5e-45 AT3G58680 242 / 6e-84 multiprotein bridging factor 1B (.1) Potri.011G109500 [exp] 142 / 2e-44 AT3G58680 240 / 3e-83 multiprotein bridging factor 1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01381 [flax] [poplar] HTH_3 Helix-turn-helix CL0123 [flax] [poplar] PF08523 [flax] [poplar] MBF1 Multiprotein bridging factor 1
Representative CDS sequence Show only first row Show all	>Lus10021776 pacid=23159293 polypeptide=Lus10021776 locus=Lus10021776.g ID=Lus10021776.BGIv1.0 annot-version=v1.0 ATGCCGAGCAGATCTACCGGAGTTTTCTCCCAGGACTGGGAAGCGGTGGTTCTGAGGAAGGCGAAGCCGACCAAATCTCAGGAACGCGATCCCAAGGCCG TGAACCAAGCTCTCCGATCAGGCGCGCCGGTCCAGACGATTAAAAAATCCGACGCCGGATCAAACAAGAAGCCGACGGCGGCTCCGGTGGTGAACGCTCG TAAGCTGGACGAGGGAACGGAGCCGGCAGCTCTGGACAAGGTAGCAGTGGAGGTGAGGCAGCTGATCCAGAAGGCTCGGCTGGAGAAGAAATGGAGCCAG GCTGAGCTGGCGAAGCAGATGAACGAGCCGACGAAGGTGGTGCAGGAGTACGAGAACGGGAAGGCGGTTCCGAACCAGGCGATCCTGGCCAAGATGGAGA GAGTGCTGGGCGTGAAGCTCAGGGGAAAGGTTTCCAAGTAG
AA sequence Show only first row Show all	>Lus10021776 pacid=23159293 polypeptide=Lus10021776 locus=Lus10021776.g ID=Lus10021776.BGIv1.0 annot-version=v1.0 MPSRSTGVFSQDWEAVVLRKAKPTKSQERDPKAVNQALRSGAPVQTIKKSDAGSNKKPTAAPVVNARKLDEGTEPAALDKVAVEVRQLIQKARLEKKWSQ AELAKQMNEPTKVVQEYENGKAVPNQAILAKMERVLGVKLRGKVSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24500		MBF1C, ATMBF1C	multiprotein bridging factor 1...		Lus10021776 [exp]	0	1
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10013797 [exp]	16.3	0.7110
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10041207 [exp]	16.3	0.7409
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10023698 [exp]	21.9	0.6985
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10000230 [exp]	28.0	0.6888
AT1G49000			unknown protein		Lus10042953 [exp]	28.6	0.7243
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10020707 [exp]	29.0	0.6392
AT1G16010		AtMRS2-1, AtMGT...	magnesium transporter 2 (.1.2....		Lus10026063 [exp]	29.5	0.6471
AT1G44414			unknown protein		Lus10018166 [exp]	31.5	0.7173
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10043208 [exp]	31.9	0.6958
AT5G42680			Protein of unknown function, D...		Lus10021759 [exp]	33.8	0.7188

Compare expression of checked genes

Lus10021776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.