Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16690 192 / 9e-58 ORC3, ATORC3 origin recognition complex subunit 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034596 [exp] 221 / 1e-68 AT5G16690 614 / 0.0 origin recognition complex subunit 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G077200 [exp] 188 / 2e-56 AT5G16690 734 / 0.0 origin recognition complex subunit 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021778 pacid=23159363 polypeptide=Lus10021778 locus=Lus10021778.g ID=Lus10021778.BGIv1.0 annot-version=v1.0 ATGTGCCCGGTCGAGTGTGTAGCCTTTCACGAAGTTGTATGTTTTAACGGTGTCGATAAACTTCAAGCGTCTTTAGTTGGTGATACGAGACGAAGAATCC AAGTCGATTTTCAAAAGTTCCATGATATCATCCGTTGCAGCTGCTGCCAAAAGAGAGGCAGTACCCTTTTGCCATCAATGCCTGATTCCTCGATTATGTA TTCACTGGCTCAGGAGCATGGGGATGTGGTTAATGTGCATGACTGGTATCAGTCATTTAAGTCCATCGTGCTTTCCATGCATACCCTTGCAAAGAAAGGG AAATCGAAGTCAAAGCGTTCTTCGCCATCGCCAAAGAAAGGAAAGATCACAACAAATGAACCTGCAAAGCCAAGTGAAGCTTCCATTCTAGCAAGGTTCT GCAAAGCGATAGTGGAGCTTCAAGTAACAGGACTTGTTAAGATGCCCAGCAGAAGACGCCCAGATTACTTGCAGAGACTTGCTTTCGGGTTGTAA
AA sequence Show only first row Show all	>Lus10021778 pacid=23159363 polypeptide=Lus10021778 locus=Lus10021778.g ID=Lus10021778.BGIv1.0 annot-version=v1.0 MCPVECVAFHEVVCFNGVDKLQASLVGDTRRRIQVDFQKFHDIIRCSCCQKRGSTLLPSMPDSSIMYSLAQEHGDVVNVHDWYQSFKSIVLSMHTLAKKG KSKSKRSSPSPKKGKITTNEPAKPSEASILARFCKAIVELQVTGLVKMPSRRRPDYLQRLAFGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10021778 [exp]	0	1
AT2G24960			unknown protein		Lus10042715 [exp]	7.0	0.9290
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10009129 [exp]	11.3	0.8635
					Lus10004506 [exp]	12.5	0.7012
AT5G51105			Protein of unknown function (D...		Lus10043285 [exp]	13.9	0.8613
AT1G21130		IGMT4	indole glucosinolate O-methylt...		Lus10030187 [exp]	16.4	0.8538
					Lus10028570 [exp]	18.7	0.8431
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10029435 [exp]	20.5	0.8431
AT3G47570			Leucine-rich repeat protein ki...		Lus10030633 [exp]	22.1	0.8431
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10030693 [exp]	23.7	0.8431
					Lus10024141 [exp]	25.1	0.8431

Compare expression of checked genes

Lus10021778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.