Plant FIBer expression Database

Lus10021779 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G18490 65 / 1e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034597
[exp]
1057 / 0 AT4G18490 74 / 2e-13 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G063500
[exp]
185 / 5e-49 AT4G18490 130 / 5e-31 unknown protein
PFAM info
Representative CDS sequence
>Lus10021779 pacid=23159319 polypeptide=Lus10021779 locus=Lus10021779.g ID=Lus10021779.BGIv1.0 annot-version=v1.0
ATGTTCGGAACAGATGATGAAATTGGAGACGAATTCCTCGGATCTTGGAAGGAGATGTCAGTTCCAGTTGATGATGCAATGGATTTCAACTTTGAAGCAG
TTCCGAAGGGGAATAAGAAGGCATTCAACTTCGGGAACATGGACATGGATTTTAATCTGGATGGAGATTTTGACAAGATATCGAACTTCAAGGTGGACAT
GGCAGACCTTGATTTCTCACGCCCATCAGAGGATGCTTCAAAATCAAAGGCAAAACAGAAAGGAGGATCCTCTGGTGGACGTCCGAAAGGAGGATTAGAT
CCCTTTGACTTCTCTTTTGATTTTAACGGCTTGGATGATTTCAACATTGATGGAAAATTGACAAAAGGAGATGAAGCTCCCGGGAAGCTCACTGAGAAAA
AGGGGGATGCTATAAAGGATATTGAATGGCATGATCCTAAAATCATGATTTCTCAAGGAACTGATGGATCTGAAAGCAGCCAAACTGCAGAATGTCCAGC
ACCAGAGAAAGCAATCAATGAGATGGTCAAGGGAATTGGAAACTCTTTGAGCAGAGATGATATCAGAAGACCTGAAGCTTTAGGCGATCACGTTGAACAT
GCAGCAAAAGAAGTACGTGGAGAAATAGTTGGTGTTACATTGGAAGGAACAAATCAAGAAAGCCCATCTTTGGATGAAGGCATGTCTACGGATCAAGGAA
ACCCATCCTCCGCTGAAGGCATGTCTACAGATCAAGGAAACCCATCCTCGGTTCAATGCATTCCCATAGATCGATGTGCTGAATATGCTTTAAAATCCAC
TCTGTCACAATCCCTTGGTGGTAGTGATTCTATCCAAGACACCACATCAGATGTACAGCCAGTAGTTGATTGCCTGGATTCTGGAGCAGATACGAAATCA
GAAGAAGTGTCTGTCAATGATGACAACCAACTCAGCAAATCGGCTCCTCTGTGCACAAACGACCAGGATGTCAAGAATGGTGAAAATAATGAGATTTGCT
CTGAGAGCACTGCAGAGGACACGAGAGAGATTGAGCCAGTGTCAAATGATAAACATGCTGAGGCTATTTTAACCAGAAGTCTCCCATTAGGAAAGCCGAA
TGATTGTGATGTCATCGAGTATTATCAACAGGCAAGCTACTTGGTGTCAATAGAAAAGGAACCTGCAACTGATAGGGTCGAATTGACAATGGAAGAAGAT
GCGAGACTTGTTCGGTCAAAATTCTTTAGGAAATCAGGGGATGTTAAACCGTCTCTTGCTTCATCTGGTGTGCAAAAATCAGTGTTTGGTAGTTCTCCAT
TCGCTCTCAAGCAGTTGAATCGCCCTGGAACCGTGACACGAGATGACTTCAGCTCTAGCGATGTCCAAACTGGGAGAAATTTGGGTAATCAATTGAAGTC
ACTCTCTAGGGAGTGGAGAAAAGGCGTACCTTCACTGGGAGGTGGAAAGAATGTTAAGAGTGCACTTAATCCCAGTAAGGATCATAAGGATGGTGGAGGG
CAAGATAATAGGACGCCAACTGATACTGCAATACTTCCTAATAGAGTGGTAGCACTAGGGGAACCAGGAGTTCTCAGAAGTGTAAGCAACAAGAAAGATC
CTGCTGTAAACAGGGATACAGAAGTAAGTAGGGATCAAGCGAATGCGCCTAGCAAACCCTTGAAAGGTATTTCCAAAGCCACAAAAACACAAGAAAATGC
AACAGCCCAAATTGGTCATCCTGTCACCGAAGAGCAGACGACTTTGAAATCTCTGAAAAGAAACTCAGAGGTTCTCTTCTTTCCTGCAAATCCTCTATTA
CAGTGCAACCGTAACTTTGAGGACTTTGTACCTGTCCTCAGAATCCGTGAAGTTGCAAATGAGTTTGGAAGCATGCTTCATGATATTACCGCCTCTGGTG
TCATAATTTCAAAGGATGTGAACTTGGAAAAACCTGTTACCTCTCTGGCCACGGAAATTGATCGAGTTCAGATGGCTGCAGAATGTGGCAGAAAGCTTGA
TGCGCTTTGCAGTAAGATGCGGAAAATGATGGAGGACGCGAAGGAGCTATCAGTGCAATCAATTGTGAACAGCAATAGATTACTTCTACTCAATCATCCA
ATGGTAGATGAGAAGATATCCTTTCAGTTTCATCCATTTTTTAACGATATTGTTTCTGCTCTTAACAAAGACTAG
AA sequence
>Lus10021779 pacid=23159319 polypeptide=Lus10021779 locus=Lus10021779.g ID=Lus10021779.BGIv1.0 annot-version=v1.0
MFGTDDEIGDEFLGSWKEMSVPVDDAMDFNFEAVPKGNKKAFNFGNMDMDFNLDGDFDKISNFKVDMADLDFSRPSEDASKSKAKQKGGSSGGRPKGGLD
PFDFSFDFNGLDDFNIDGKLTKGDEAPGKLTEKKGDAIKDIEWHDPKIMISQGTDGSESSQTAECPAPEKAINEMVKGIGNSLSRDDIRRPEALGDHVEH
AAKEVRGEIVGVTLEGTNQESPSLDEGMSTDQGNPSSAEGMSTDQGNPSSVQCIPIDRCAEYALKSTLSQSLGGSDSIQDTTSDVQPVVDCLDSGADTKS
EEVSVNDDNQLSKSAPLCTNDQDVKNGENNEICSESTAEDTREIEPVSNDKHAEAILTRSLPLGKPNDCDVIEYYQQASYLVSIEKEPATDRVELTMEED
ARLVRSKFFRKSGDVKPSLASSGVQKSVFGSSPFALKQLNRPGTVTRDDFSSSDVQTGRNLGNQLKSLSREWRKGVPSLGGGKNVKSALNPSKDHKDGGG
QDNRTPTDTAILPNRVVALGEPGVLRSVSNKKDPAVNRDTEVSRDQANAPSKPLKGISKATKTQENATAQIGHPVTEEQTTLKSLKRNSEVLFFPANPLL
QCNRNFEDFVPVLRIREVANEFGSMLHDITASGVIISKDVNLEKPVTSLATEIDRVQMAAECGRKLDALCSKMRKMMEDAKELSVQSIVNSNRLLLLNHP
MVDEKISFQFHPFFNDIVSALNKD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G18490 unknown protein Lus10021779
[exp]
0 1
AT4G18490 unknown protein Lus10034597
[exp]
2.8 0.8695
AT5G24760 GroES-like zinc-binding dehydr... Lus10031319
[exp]
3.5 0.8868
AT2G45900 Phosphatidylinositol N-acetygl... Lus10042850
[exp]
4.5 0.8815
AT1G19835 Plant protein of unknown funct... Lus10032386
[exp]
7.3 0.8387
AT4G35790 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLI... Lus10028401
[exp]
8.1 0.8774
AT5G57830 Protein of unknown function, D... Lus10022171
[exp]
8.9 0.8956
AT5G35730 EXS (ERD1/XPR1/SYG1) family pr... Lus10027149
[exp]
9.8 0.8310
AT4G38050 Xanthine/uracil permease famil... Lus10025716
[exp]
10.8 0.8825
AT4G21390 B120 S-locus lectin protein kinase ... Lus10020051
[exp]
11.1 0.8133
AT5G38900 Thioredoxin superfamily protei... Lus10034368
[exp]
11.5 0.8612

Lus10021779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.