Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14860 239 / 2e-81 ATNUDT18 nudix hydrolase homolog 18 (.1) AT2G01670 233 / 5e-79 ATNUDT17 nudix hydrolase homolog 17 (.1) AT1G18300 197 / 1e-64 ATNUDT4 nudix hydrolase homolog 4 (.1) AT1G73540 194 / 3e-63 ATNUDT21 nudix hydrolase homolog 21 (.1) AT3G26690 126 / 1e-36 ATNUDX13, ATNUDT13 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, nudix hydrolase homolog 13 (.1.2) AT1G12880 125 / 1e-36 ATNUDT12 nudix hydrolase homolog 12 (.1) AT3G12600 118 / 6e-34 ATNUDT16 nudix hydrolase homolog 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034598 [exp] 346 / 1e-123 AT1G14860 248 / 5e-85 nudix hydrolase homolog 18 (.1) Lus10001598 [exp] 298 / 1e-104 AT1G14860 252 / 1e-86 nudix hydrolase homolog 18 (.1) Lus10003713 [exp] 248 / 8e-85 AT1G14860 213 / 8e-71 nudix hydrolase homolog 18 (.1) Lus10008660 [exp] 137 / 9e-41 AT3G12600 221 / 6e-74 nudix hydrolase homolog 16 (.1.2) Lus10026164 [exp] 135 / 2e-40 AT3G12600 221 / 1e-74 nudix hydrolase homolog 16 (.1.2) Lus10024137 [exp] 105 / 5e-29 AT3G12600 211 / 1e-70 nudix hydrolase homolog 16 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107300 [exp] 261 / 4e-90 AT2G01670 223 / 2e-75 nudix hydrolase homolog 17 (.1) Potri.008G134000 [exp] 253 / 4e-87 AT2G01670 218 / 3e-73 nudix hydrolase homolog 17 (.1) Potri.017G131000 [exp] 207 / 7e-69 AT2G01670 223 / 6e-75 nudix hydrolase homolog 17 (.1) Potri.004G085600 [exp] 198 / 3e-65 AT1G14860 206 / 2e-68 nudix hydrolase homolog 18 (.1) Potri.015G035000 [exp] 197 / 1e-63 AT1G18300 195 / 2e-62 nudix hydrolase homolog 4 (.1) Potri.012G044300 [exp] 194 / 2e-63 AT1G18300 199 / 5e-65 nudix hydrolase homolog 4 (.1) Potri.003G194900 [exp] 137 / 2e-41 AT3G12600 226 / 2e-76 nudix hydrolase homolog 16 (.1.2) Potri.001G029500 [exp] 137 / 3e-41 AT3G12600 219 / 5e-74 nudix hydrolase homolog 16 (.1.2) Potri.001G069200 [exp] 119 / 1e-34 AT1G12880 219 / 2e-73 nudix hydrolase homolog 12 (.1) Potri.003G161100 [exp] 119 / 1e-33 AT1G12880 213 / 4e-70 nudix hydrolase homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10021780 pacid=23159348 polypeptide=Lus10021780 locus=Lus10021780.g ID=Lus10021780.BGIv1.0 annot-version=v1.0 ATGGTTTGTTTGGTAGCAAGAACTGGGAGGGAGTTGCAGAGATACAATCCGACAGGCGGCCGTCAAGTCGTCGGATGCATTCCTTACAGATATAAGAGCT ACGACGATGGGTCGATCTCCGATGAATTGGAGGTTCTTATAATCTCATCTCAAAAGGGTGGTTCTGGAATGATGTTCCCCAAGGGTGGTTGGGAACTAGA CGAATCTGAGCAAGAAGCTGCTTCAAGGGAGTCTTTTGAGGAGGCTGGAGTTCTTGGCACAGTTGAGGATCAACTTGGGAAATGGAATTTCATGAGCAAG AGAAATGGTATATTCTATGAAGGGTACATGTTCCCTTTGCTAGTGAGTAAGGAGCTTGATTTCTGGCCAGAGAGTCCTGTACGGAAGAGGCTTTGGTTGA CTGTGGATGAGGCCAGAGATGCTTGCAGGCACTGGTGGATGAAGGAAGCTCTTGATTTACTGGTTGAACGCCTCAACTGCTTAAAGACTGATTCTGAGGA AGAAGAGGATAACCAAGGAGAAGAACAAGTGGTGACTTGCAGGCTTAGTTAG
AA sequence Show only first row Show all	>Lus10021780 pacid=23159348 polypeptide=Lus10021780 locus=Lus10021780.g ID=Lus10021780.BGIv1.0 annot-version=v1.0 MVCLVARTGRELQRYNPTGGRQVVGCIPYRYKSYDDGSISDELEVLIISSQKGGSGMMFPKGGWELDESEQEAASRESFEEAGVLGTVEDQLGKWNFMSK RNGIFYEGYMFPLLVSKELDFWPESPVRKRLWLTVDEARDACRHWWMKEALDLLVERLNCLKTDSEEEEDNQGEEQVVTCRLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10021780 [exp]	0	1
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10034191 [exp]	2.2	0.9458
AT5G17680			disease resistance protein (TI...		Lus10030345 [exp]	4.1	0.8958
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10000539 [exp]	4.9	0.9237
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10029601 [exp]	8.0	0.9055
AT5G47390	MYB		myb-like transcription factor ...		Lus10004384 [exp]	9.2	0.9202
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Lus10028275 [exp]	9.6	0.8872
					Lus10034192 [exp]	10.6	0.9183
AT2G23810		TET8	tetraspanin8 (.1)		Lus10015494 [exp]	11.8	0.9144
AT2G23810		TET8	tetraspanin8 (.1)		Lus10019965 [exp]	13.0	0.9125
AT3G11760			unknown protein		Lus10021254 [exp]	14.4	0.8980

Compare expression of checked genes

Lus10021780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.