Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24610 621 / 0 Rubisco methyltransferase family protein (.1) AT1G14030 78 / 4e-15 Rubisco methyltransferase family protein (.1) AT4G20130 73 / 1e-13 PTAC14 plastid transcriptionally active 14 (.1) AT3G55080 57 / 1e-08 SET domain-containing protein (.1.2) AT5G14260 56 / 3e-08 Rubisco methyltransferase family protein (.1.2.3) AT1G01920 54 / 1e-07 SET domain-containing protein (.1.2) AT3G07670 47 / 3e-05 Rubisco methyltransferase family protein (.1) AT2G18850 43 / 0.0004 SET domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034599 [exp] 815 / 0 AT1G24610 607 / 0.0 Rubisco methyltransferase family protein (.1) Lus10006942 [exp] 69 / 4e-12 AT4G20130 683 / 0.0 plastid transcriptionally active 14 (.1) Lus10022333 [exp] 59 / 7e-09 AT5G14260 753 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10041585 [exp] 59 / 8e-09 AT5G14260 765 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10035757 [exp] 49 / 8e-06 AT5G17240 485 / 1e-168 SET domain group 40 (.1) Lus10013825 [exp] 46 / 5e-05 AT3G56570 439 / 9e-152 SET domain-containing protein (.1) Lus10019677 [exp] 46 / 5e-05 AT1G01920 262 / 5e-84 SET domain-containing protein (.1.2) Lus10012309 [exp] 46 / 6e-05 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10040345 [exp] 45 / 9e-05 AT3G55080 456 / 9e-158 SET domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G134200 [exp] 649 / 0 AT1G24610 639 / 0.0 Rubisco methyltransferase family protein (.1) Potri.003G155100 [exp] 79 / 2e-15 AT4G20130 679 / 0.0 plastid transcriptionally active 14 (.1) Potri.008G090500 [exp] 65 / 5e-11 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G047400 [exp] 56 / 3e-08 AT3G55080 511 / 1e-179 SET domain-containing protein (.1.2) Potri.017G066500 [exp] 51 / 1e-06 AT5G14260 783 / 0.0 Rubisco methyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09273 [flax] [poplar] Rubis-subs-bind Rubisco LSMT substrate-binding PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10021783 pacid=23159325 polypeptide=Lus10021783 locus=Lus10021783.g ID=Lus10021783.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCCAAATTCGTCGCCGCCGCCTCGTTAACCCACTGCCGTCCTTTAACCTGCGCCTCCGCCGCCGGTGGTGCTGCTTCCGCCTCAGTCTCGT CGTACAGCTCACGCCTCGTCGCTTATCCTCCAGACCTAATCAAATGGGTAAGGCGTGAAGGTGGGTTTGTCCACCAGGCCGTCAAATTTTCACAAGACGA ATCCAATGGTCTCGGCCTCGTCGCCTCTCGGCCATTCCCTAAAGGCTCTCAGCTCATTGCTCTTCCCGATCACATTCCTCTCAAATTTGGAGCTACTTCC CGCCTGGATGCCGTCGGAGACGATGCAGCCGCTGCTTCCGTTTTGGCCAATTTGGCTCGGCCGGTCCCTGAGGAACTATGGGCAATGAAATTGGGTTTGA AGCTTCTCCAAGAAAGAGCGAAGGCTGGATCCTTTTGGTGGCCATACATCAGCAATCTACCTGAAGCATACACTGTGCCTATCTTTTTCCCAGGGGAGGA TATCAAGAACCTGCAGTATGCTCCTCTTCTCCACCAGGTAAACAAAAGATGCCGGTTTCTTCTCGAGTTTGAGCAACTGGTAAAGCGTACGCTTGAGAAT CTGAGGCCAAGTGATCACCCTTTTAGCGGTCAGAGCATTGATGCATCGTCACTTGGATGGGCAATGTCTGCTGTCTCATCTAGAGCATTCCGCTTGCATG GAGAAAAGCTTCCTGGTGGGGGACACGCGGATGTTCCTATGATGCTTCCATTGATTGATATGTGCAACCATAGCTTTAATCCAAATGCACGAATTGTTCA GGAGCAAGGGTCTGCAGATCAATCCATGCTTATAACGGTTGTAGCAGACACTGCAATTAACGAGGATGATCCTTTGCTAATCAATTATGGCTCTTTGAGC AACGATCTTTTCTTATTGGATTATGGATTTGTGGTGCCCTCAAATCCATACGACTGCATTGAGCTCAAATTTGATGGGGCTCTTCTTGATGCTGCAAGCG AGGCTGCTGGCGTCTCTTCTCCTAACTTCTCGTCACCCGCTCCTTGGCAGAAAGACATCTTATCCCAGCTCAATTTATATGGAGATGCTCCTAATCTCAA AGTAACAATAGGCGGCAAGGACCTAGTAGAGGGCAGAATGATGGCAGCACTCCGAGTGATGCTTGCAAGCGAAAGAGAAACGGTGGAGAAGCATGATCTG AGCACCCTAAAGTCCCTGTCCTCTGATGCACCACTCGGTACAGCAAACGAGGTAGCTGCATTACGCACTGTAATTGCTCTGTGTGTGATTGCACTGGGCC ACTTCCCGACCAAAATGATGGAGGACGAGGCTTTACTGAAGAAAGGCGGCGTGTCGAGCACAGGTGAACTAGCTATCCAGTTTAGAATCCAGAAGAAGTC TCTGATCATAGATGCGATGAGAGATCTGACAAGGAAGGTGAAGTTGCTGTCAATTGTTCAAGGACATGGCTTAGCCCAAGGCTGA
AA sequence Show only first row Show all	>Lus10021783 pacid=23159325 polypeptide=Lus10021783 locus=Lus10021783.g ID=Lus10021783.BGIv1.0 annot-version=v1.0 MAASKFVAAASLTHCRPLTCASAAGGAASASVSSYSSRLVAYPPDLIKWVRREGGFVHQAVKFSQDESNGLGLVASRPFPKGSQLIALPDHIPLKFGATS RLDAVGDDAAAASVLANLARPVPEELWAMKLGLKLLQERAKAGSFWWPYISNLPEAYTVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLEFEQLVKRTLEN LRPSDHPFSGQSIDASSLGWAMSAVSSRAFRLHGEKLPGGGHADVPMMLPLIDMCNHSFNPNARIVQEQGSADQSMLITVVADTAINEDDPLLINYGSLS NDLFLLDYGFVVPSNPYDCIELKFDGALLDAASEAAGVSSPNFSSPAPWQKDILSQLNLYGDAPNLKVTIGGKDLVEGRMMAALRVMLASERETVEKHDL STLKSLSSDAPLGTANEVAALRTVIALCVIALGHFPTKMMEDEALLKKGGVSSTGELAIQFRIQKKSLIIDAMRDLTRKVKLLSIVQGHGLAQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24610			Rubisco methyltransferase fami...		Lus10021783 [exp]	0	1
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	1.0	0.9640
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10020990 [exp]	2.4	0.9388
AT4G37510			Ribonuclease III family protei...		Lus10011533 [exp]	2.8	0.9537
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10006672 [exp]	4.6	0.9452
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10027815 [exp]	4.6	0.9385
AT4G37510			Ribonuclease III family protei...		Lus10019289 [exp]	5.5	0.9366
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Lus10019959 [exp]	5.7	0.9262
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	6.3	0.9416
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	6.7	0.9401
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Lus10042349 [exp]	7.9	0.9139

Compare expression of checked genes

Lus10021783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.