Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73670 654 / 0 ATMPK15 MAP kinase 15 (.1) AT3G18040 647 / 0 ATMPK9 MAP kinase 9 (.1.2) AT2G01450 635 / 0 ATMPK17 MAP kinase 17 (.1.2.3.4) AT1G18150 626 / 0 ATMPK8 Protein kinase superfamily protein (.1.2.3) AT5G19010 606 / 0 ATMPK16 mitogen-activated protein kinase 16 (.1) AT2G42880 585 / 0 ATMPK20 MAP kinase 20 (.1) AT3G14720 576 / 0 ATMPK19 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) AT1G53510 567 / 0 ATMPK18 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) AT4G01370 305 / 7e-100 ATMPK4 MAP kinase 4 (.1) AT4G11330 303 / 9e-99 ATMPK5 MAP kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034601 [exp] 861 / 0 AT1G73670 597 / 0.0 MAP kinase 15 (.1) Lus10038956 [exp] 634 / 0 AT3G18040 817 / 0.0 MAP kinase 9 (.1.2) Lus10041234 [exp] 607 / 0 AT5G19010 911 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10021945 [exp] 595 / 0 AT5G19010 912 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10027248 [exp] 584 / 0 AT3G18040 741 / 0.0 MAP kinase 9 (.1.2) Lus10013702 [exp] 580 / 0 AT1G53510 845 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10005568 [exp] 579 / 0 AT1G53510 853 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10018127 [exp] 317 / 2e-104 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10036136 [exp] 313 / 1e-102 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G130000 [exp] 768 / 0 AT1G73670 697 / 0.0 MAP kinase 15 (.1) Potri.010G112200 [exp] 749 / 0 AT1G73670 687 / 0.0 MAP kinase 15 (.1) Potri.015G040300 [exp] 649 / 0 AT3G18040 767 / 0.0 MAP kinase 9 (.1.2) Potri.012G048600 [exp] 643 / 0 AT3G18040 793 / 0.0 MAP kinase 9 (.1.2) Potri.010G029700 [exp] 618 / 0 AT5G19010 921 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.008G200800 [exp] 615 / 0 AT5G19010 922 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.011G102500 [exp] 603 / 0 AT3G14720 874 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.002G059900 [exp] 589 / 0 AT2G42880 897 / 0.0 MAP kinase 20 (.1) Potri.005G201800 [exp] 587 / 0 AT2G42880 904 / 0.0 MAP kinase 20 (.1) Potri.001G381300 [exp] 572 / 0 AT3G14720 875 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021784 pacid=23159336 polypeptide=Lus10021784 locus=Lus10021784.g ID=Lus10021784.BGIv1.0 annot-version=v1.0 ATGCCGGACAAGGAGTTTTTCACCGAGTATGGCGAGGCAAGCCAGTACGACATACAAGAAGTGGTTGGGAAAGGAAGCTATGGGATCGTTGCATCTGCTA TAGACACTCACACTGGGGAGAGAGTGGCAATCAAGAAGATGAACAACATCTTCGAGCATGTCTCTGATGCCACACGCATCCTGCGAGAGATCAAGCTTCT TCGCCTGCTTCGACACCCCGACATTGTCGAAATCAAGCACATTATGCTCCCTGCTTCCCCAAGGGAGTTTAAAGACATCTATGTCGTTTTCGAGCTAATG GAATCTGACCTCCACCAGGTCATCAAGCTGAACAACGACTTGACTCCTGATCATCACCAGTTCTTCTTGTACCAGCTTCTCCGAGCTCTCAAGTATATAC ATTCAGCTCATGTCTTTCATAGAGACCTGAAGCCGAAAAATATTTTGGCGAATGCAGACTGCAAGCTGAAACTTTGTGACTTTGGGCTTGCTCGTGTGTC ATTTAGTAATGCCCCTTCCGCTATTTTTTGGACAGATTATGTCGCGACTCGATGGTATCGTGCCCCGGAATTGTGTGGTTCCTTTTCTTCCAAGTACACG CCTGCAATTGATATATGGAGCATAGGATGCATATTTGCGGAGTTGGTAACAGGCAAGCCCTTGTTTCCTGGCAGAAATGTGGTGCATCAGTTGGAACTCA TTACTGATTTGCTTGGCACTCCCCCTACTGAATCCGTTGCACGGATTAGGAACGAAAAAGCTAGGAAGTATTTGACTGGTATGAGCAAGAAACAGCCAAT TCCATTCACCAAATATTTCCCAGGCAAAGACCCAAGGGCTCTTCGCTTATTGGAGCGTATGCTAGCTTTTGATCCTAAAGATCGTCCATCCGCAGAAGAG GCTTTGGCTGATCCATATTTTGACGGTCTGGCAAATTTGGAGAATGAACCATCCAGGCAGCCCATTTCAAAGCTGGAGTTTGAGTTTGAAAGGAGAAGAT TGACAAGAGATGATGTAAGAGAGTTAATCTATAGAGAGATATTGGAGTACCATCCTGAAATGCTAAAAGAGTACCTCCGAGGCATAGACCAGACTCACTT CATGTACCCAAGCGGAGTTGACTGGTGCAAGGAACAATTTGCCTCTCTTGAGGACGACAGCGGTGAATCTGAAAGAAACAGCCCTGTGCATAGGAAACAC GCCACCTCTCTGCCAAGGGAGAGGGTGTGCGCCATTGACGAGCATGATGATCCGAAGAAGGGCTGTGAATGTTCTCATGGAGAGGATGTGAAGCCGAATT CCAATTCTGTTACTCGTCCAGCGACTGTGCAGAGCCAGAGCCCTCCTGCGGAGGAAGCGATACCATCTGGTAACGGGATCGGTACAGTGAGTAAACAGAA GGGCAGCAGCAGTGGTGGCAACTCGATAACGCCCACTTGCAGCAGTGGGCGTAGCCTGTTGAAGAGTGATAGTATGTGTGCTTCAAGGTGTGTTGGTGTT GTTGGAAGTGATAGGCAGGTTCATGCTCTGTGA
AA sequence Show only first row Show all	>Lus10021784 pacid=23159336 polypeptide=Lus10021784 locus=Lus10021784.g ID=Lus10021784.BGIv1.0 annot-version=v1.0 MPDKEFFTEYGEASQYDIQEVVGKGSYGIVASAIDTHTGERVAIKKMNNIFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPASPREFKDIYVVFELM ESDLHQVIKLNNDLTPDHHQFFLYQLLRALKYIHSAHVFHRDLKPKNILANADCKLKLCDFGLARVSFSNAPSAIFWTDYVATRWYRAPELCGSFSSKYT PAIDIWSIGCIFAELVTGKPLFPGRNVVHQLELITDLLGTPPTESVARIRNEKARKYLTGMSKKQPIPFTKYFPGKDPRALRLLERMLAFDPKDRPSAEE ALADPYFDGLANLENEPSRQPISKLEFEFERRRLTRDDVRELIYREILEYHPEMLKEYLRGIDQTHFMYPSGVDWCKEQFASLEDDSGESERNSPVHRKH ATSLPRERVCAIDEHDDPKKGCECSHGEDVKPNSNSVTRPATVQSQSPPAEEAIPSGNGIGTVSKQKGSSSGGNSITPTCSSGRSLLKSDSMCASRCVGV VGSDRQVHAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10021784 [exp]	0	1
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10034601 [exp]	1.0	0.9573
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	2.4	0.9420
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Lus10000908 [exp]	2.4	0.9210
AT4G10970			unknown protein		Lus10023075 [exp]	4.5	0.9431
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10035230 [exp]	5.7	0.9305
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10018289 [exp]	11.0	0.9105
AT5G02520			unknown protein		Lus10025814 [exp]	12.8	0.8984
AT2G30105			unknown protein		Lus10031291 [exp]	13.0	0.9157
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	14.8	0.9093
AT5G12230		MED19A	unknown protein		Lus10028832 [exp]	15.2	0.9093

Compare expression of checked genes

Lus10021784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.