Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64880 541 / 0 Ribosomal protein S5 family protein (.1) AT2G33800 91 / 3e-20 EMB3113 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034602 [exp] 828 / 0 AT1G64880 571 / 0.0 Ribosomal protein S5 family protein (.1) Lus10025445 [exp] 72 / 2e-13 AT2G33800 357 / 3e-124 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) Lus10015317 [exp] 71 / 2e-13 AT2G33800 358 / 2e-124 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G076200 [exp] 572 / 0 AT1G64880 532 / 0.0 Ribosomal protein S5 family protein (.1) Potri.004G045700 [exp] 79 / 6e-16 AT2G33800 316 / 6e-108 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [flax] [poplar] DSRM PF00333 [flax] [poplar] Ribosomal_S5 Ribosomal protein S5, N-terminal domain CL0329 [flax] [poplar] S5 PF03719 [flax] [poplar] Ribosomal_S5_C Ribosomal protein S5, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021785 pacid=23159364 polypeptide=Lus10021785 locus=Lus10021785.g ID=Lus10021785.BGIv1.0 annot-version=v1.0 ATGCAAGGCACTCGTCTCCTTTTCCTTCGCCACATAAAAAACGTTAGAAGAGTTCCACACCCCCAAATTTGCACACAAATTAACTCTGCTTCACAATCAT TGACCATCCATGATCCCTCGTTCTCCCACTCCTCCAGAAGCTGCTTCTCAACGTCAGTTGATGAATCATCTGTCGAAGTGCGGGACCTTTTAGCAGAGGT GGAAAGGGAGAAACAACGAGAAAGGGAGGCACGCAAGCGTGCAGGGTTGGACACTAAAGACATTGATGCTGAAGATGAGGAGGATTACATGGGAGTGGGG CCTCTGATTGAGAAATTAGAGAAAGAGAAGCTAAAAGATGTTGGTGACAAATTGTATCTTTTGGAGGAGCCTTCTGATTCAGATAGTGATGAGGATGATG AAAGGTTTGAGCCAGATGCGATCACAAAAAGGTTTGAACAGTTTGAGAAGAAGCACATACGGCATAAGGAGTTGCTTGACAGTTTTACTTCTAGTGAAAC ACTTGATGAGGCTTACAAATGGATGACTAGAATTGACAAGTTTGAGCAAAAGCATTTCAGGCTTCGGCCTGAGTACAGAGTCATTGGTGAATTGATGAAT CGTCTGAAGGTAGCTGAAGGCAAGGAAAAATTCATCCTGCAACAGAAGATCAACAGAGCTTTAAGGATGGTGAACTGGAAGGAAGCTTATGATCCCAATG ATCCAGCTAATTTTGGAGTTATCCAACACTCTCAGGTTGGATCTAATGTTGATCTCATTGATAGTGCTGACGTCGAGGATGAGAAGGAAAAAGTCCAGGC AGATTCTGATGAGGAAGAGGAGTTTGATGATATGAAGGAAAGAGATGATATACTGCTAGAGAAGTTGAATGCTATTGATAAGCAACTGGAGGATAAGTTA GCTGAATTGGATTATACATTTGGAAAGAAAGGCAAGTCTCTTGAGGAGGAGATTCGGGATCTGGCGGAGGAAAGGAATGCTCTGACAGAAAAGAAAAGGA AACCAATGTATAGAAAGGGTTTTGATGTGAAACTGATTGATGTGAATCGAACTTGTAAAGTTACAAAGGGAGGCCAAGTTGTCAAGTACACTGCTATACT AGCTTGCGGGAATTATCATGGTGTAGTTGGTTTTGCCAAAGCTAAAGGCCCTGCAATCCCTATTGCTCTTCAGAAGGCGTATGAGAAGTGTTTTCAGAAT CTCCACACTGTAGAACGACACGAGGAGCACACAATTGCGCATGCTATACAAACTGAATACAAGAAGACAAAGATCTATCTCTGGCCAGCATCGACTAGAA CAGGTATGAAAGCAGGGAAAACTGTCCAAACCATTTTGAATCTGGCTGGTTTCAAGAATATCAAGTCTAAGGTTGTTGGCTCGAGGAATCCACACAACAC TGTGAAGGCTCTTTTCAAAGCCCTGAATGCTATCGAAACTCCAAAGGATGTTCAAGAGAAGTTTGGCCGGACAGTGGTGGAGAAGTACTTGCTCTGA
AA sequence Show only first row Show all	>Lus10021785 pacid=23159364 polypeptide=Lus10021785 locus=Lus10021785.g ID=Lus10021785.BGIv1.0 annot-version=v1.0 MQGTRLLFLRHIKNVRRVPHPQICTQINSASQSLTIHDPSFSHSSRSCFSTSVDESSVEVRDLLAEVEREKQREREARKRAGLDTKDIDAEDEEDYMGVG PLIEKLEKEKLKDVGDKLYLLEEPSDSDSDEDDERFEPDAITKRFEQFEKKHIRHKELLDSFTSSETLDEAYKWMTRIDKFEQKHFRLRPEYRVIGELMN RLKVAEGKEKFILQQKINRALRMVNWKEAYDPNDPANFGVIQHSQVGSNVDLIDSADVEDEKEKVQADSDEEEEFDDMKERDDILLEKLNAIDKQLEDKL AELDYTFGKKGKSLEEEIRDLAEERNALTEKKRKPMYRKGFDVKLIDVNRTCKVTKGGQVVKYTAILACGNYHGVVGFAKAKGPAIPIALQKAYEKCFQN LHTVERHEEHTIAHAIQTEYKKTKIYLWPASTRTGMKAGKTVQTILNLAGFKNIKSKVVGSRNPHNTVKALFKALNAIETPKDVQEKFGRTVVEKYLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64880			Ribosomal protein S5 family pr...		Lus10021785 [exp]	0	1
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10028007 [exp]	2.0	0.8636
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10014680 [exp]	2.2	0.8827
AT1G64880			Ribosomal protein S5 family pr...		Lus10034602 [exp]	3.2	0.8592
AT1G42440			unknown protein		Lus10013232 [exp]	6.5	0.8784
AT1G09290			unknown protein		Lus10023158 [exp]	11.7	0.7582
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021017 [exp]	12.4	0.8728
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	14.1	0.8462
AT4G15640			unknown protein		Lus10012810 [exp]	14.4	0.8423
AT3G16810		APUM24	pumilio 24 (.1)		Lus10037712 [exp]	16.2	0.8441
AT1G20370			Pseudouridine synthase family ...		Lus10005641 [exp]	16.3	0.8380

Compare expression of checked genes

Lus10021785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.