Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54980 150 / 2e-46 Uncharacterised protein family (UPF0497) (.1) AT1G17200 96 / 8e-25 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT3G14380 86 / 3e-21 Uncharacterised protein family (UPF0497) (.1) AT4G16442 50 / 6e-08 Uncharacterised protein family (UPF0497) (.1) AT4G25830 43 / 3e-05 Uncharacterised protein family (UPF0497) (.1) AT2G35760 42 / 0.0001 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034604 [exp] 303 / 6e-107 AT5G54980 176 / 1e-56 Uncharacterised protein family (UPF0497) (.1) Lus10042471 [exp] 87 / 3e-21 AT1G17200 242 / 6e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10026196 [exp] 85 / 1e-20 AT1G17200 241 / 1e-81 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10032005 [exp] 46 / 2e-06 AT4G15620 65 / 1e-13 Uncharacterised protein family (UPF0497) (.1) Lus10038800 [exp] 46 / 4e-06 AT2G35760 243 / 2e-82 Uncharacterised protein family (UPF0497) (.1) Lus10031998 [exp] 45 / 6e-06 AT4G15620 80 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Lus10035168 [exp] 45 / 6e-06 AT4G15620 78 / 8e-18 Uncharacterised protein family (UPF0497) (.1) Lus10039060 [exp] 45 / 8e-06 AT2G35760 242 / 5e-82 Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 42 / 8e-05 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G208300 [exp] 184 / 9e-60 AT5G54980 176 / 2e-56 Uncharacterised protein family (UPF0497) (.1) Potri.011G140200 [exp] 90 / 1e-22 AT1G17200 223 / 3e-74 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.008G052451 [exp] 79 / 8e-20 AT5G54980 88 / 2e-23 Uncharacterised protein family (UPF0497) (.1) Potri.001G436400 [exp] 81 / 4e-19 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.017G062100 [exp] 54 / 5e-09 AT4G25040 82 / 6e-20 Uncharacterised protein family (UPF0497) (.1) Potri.001G323700 [exp] 49 / 3e-07 AT4G15620 75 / 8e-17 Uncharacterised protein family (UPF0497) (.1) Potri.015G103600 [exp] 45 / 6e-06 AT4G25040 90 / 9e-23 Uncharacterised protein family (UPF0497) (.1) Potri.012G104300 [exp] 44 / 1e-05 AT4G25040 97 / 7e-26 Uncharacterised protein family (UPF0497) (.1) Potri.006G208800 [exp] 40 / 0.0002 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.001G188000 [exp] 40 / 0.0005 AT3G16300 131 / 5e-38 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10021788 pacid=23159326 polypeptide=Lus10021788 locus=Lus10021788.g ID=Lus10021788.BGIv1.0 annot-version=v1.0 ATGGCTCCTATTACAAGGCTGAAGCTGCTGGATTCATCTCTCAGAATCACATCCATCCCTCTCAGCGTTGCAGCCTTGTGGCTAATTGTTGCCAACCGAC AAGACAATCCTGATCTTGGCCCAGTTGCCTTCAAAAACATCCAAGGCCTCAAATACATGGCTTGGATCAGTGGGATTAGTGCCGCATATGCAGTTATTGC AGCTGTTAGCTCATGGATCAAATGCTTGCTCTCCAGATCCTGGCTCTTCTTTCTCTCTGACCAGATTGTAACGTACCTAATGGTAACATCTGGAGCTGGA GTATCGGAGATTATATACTTGCTGTATTTTGGAGACTTGACAGTTGGTTGGAGTGAAGCCTGCCGTTCCTATCCAAACTTCTGCAAAAGAATGGAAGTTG CTGTGATACTACACGCTTTGGCTCTCTTCTGTTTCATTTTTGTAACTCTCATTTCTGCTTATAGAGCATTTAGCTTGTTTCAGCCTCCTTCCCTTCCTTC CAAGGATACTACTGCTGCTGTAGAAGATACCAGACCTGCTACTACGTAA
AA sequence Show only first row Show all	>Lus10021788 pacid=23159326 polypeptide=Lus10021788 locus=Lus10021788.g ID=Lus10021788.BGIv1.0 annot-version=v1.0 MAPITRLKLLDSSLRITSIPLSVAALWLIVANRQDNPDLGPVAFKNIQGLKYMAWISGISAAYAVIAAVSSWIKCLLSRSWLFFLSDQIVTYLMVTSGAG VSEIIYLLYFGDLTVGWSEACRSYPNFCKRMEVAVILHALALFCFIFVTLISAYRAFSLFQPPSLPSKDTTAAVEDTRPATT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54980			Uncharacterised protein family...		Lus10021788 [exp]	0	1
AT5G06270			unknown protein		Lus10021305 [exp]	7.3	0.7027
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10042203 [exp]	10.3	0.7481
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10001153 [exp]	11.6	0.7498
AT3G22104			Phototropic-responsive NPH3 fa...		Lus10039710 [exp]	18.2	0.6452
AT5G63650		SNRK2-5, SNRK2....	SNF1-RELATED PROTEIN KINASE 2H...		Lus10004291 [exp]	32.1	0.5970
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006855 [exp]	35.4	0.6963
AT5G06270			unknown protein		Lus10016982 [exp]	36.7	0.6736
					Lus10028745 [exp]	38.0	0.6389
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10008612 [exp]	39.0	0.6857
AT5G01090			Concanavalin A-like lectin fam...		Lus10027751 [exp]	43.0	0.6483

Compare expression of checked genes

Lus10021788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.