Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60080 427 / 4e-152 3'-5'-exoribonuclease family protein (.1) AT3G60500 89 / 7e-20 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) AT3G12990 86 / 4e-19 RRP45A ribonuclease PH45A (.1.2.3) AT3G07750 82 / 1e-17 3'-5'-exoribonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034605 [exp] 548 / 0 AT1G60080 425 / 1e-150 3'-5'-exoribonuclease family protein (.1) Lus10001173 [exp] 79 / 7e-17 AT3G07750 466 / 6e-168 3'-5'-exoribonuclease family protein (.1.2) Lus10009708 [exp] 79 / 2e-16 AT3G60500 476 / 3e-166 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Lus10001747 [exp] 76 / 2e-15 AT3G07750 462 / 2e-166 3'-5'-exoribonuclease family protein (.1.2) Lus10036022 [exp] 74 / 2e-14 AT3G60500 439 / 4e-150 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Lus10006382 [exp] 50 / 7e-07 AT3G07750 332 / 1e-114 3'-5'-exoribonuclease family protein (.1.2) Lus10003036 [exp] 41 / 0.0006 AT3G61620 370 / 9e-131 3'-5'-exoribonuclease family protein (.1.2) Lus10005148 [exp] 40 / 0.001 AT3G61620 376 / 4e-133 3'-5'-exoribonuclease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G051200 [exp] 494 / 2e-178 AT1G60080 434 / 8e-155 3'-5'-exoribonuclease family protein (.1) Potri.016G055600 [exp] 491 / 4e-177 AT1G60080 442 / 8e-158 3'-5'-exoribonuclease family protein (.1) Potri.014G166200 [exp] 89 / 2e-20 AT3G07750 422 / 3e-150 3'-5'-exoribonuclease family protein (.1.2) Potri.009G047500 [exp] 91 / 3e-20 AT3G60500 548 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.001G253200 [exp] 79 / 3e-16 AT3G60500 526 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.014G094300 [exp] 41 / 0.0006 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1
Representative CDS sequence Show only first row Show all	>Lus10021789 pacid=23159333 polypeptide=Lus10021789 locus=Lus10021789.g ID=Lus10021789.BGIv1.0 annot-version=v1.0 ATGGAGTCAGGAGACTTGTCAGCAGAGATGGAAGTGGATGCATTCAGACGTCTATTCCCACTACGCTTCTATGAGCGCCATCTCTATGAATCTATACGGC CTGATGGCAGGCCACTTGGAAAGGCTAGAGACACTACATTGGCTTTGGGAGCTGTTGCATCTGCTGATGGATCAGCACTAGCGAAGATTGGCTCTACTAC AATGCTGGCTGCTATAAAAATGGAAGTCATGACTCCTTCCACTGACTCACCAGATGAGGGGTCTTTAGCTATTGAGTTCCACATGCCACCAATCTGCTCT CCTATTGTTAGGCCTGGCAGGCCAGCTGAAGCTGCACCTGTTGTGTCGAAGCAATTGTCGGATACGATATTGAGTTCTGGGATGATTAATCTGAAGGAAC TTTCTTTGGTCAGTGGAAAAGCTGCATGGATGGTTTATTTGGACATATATTGTCTAGACGCCGATGGTGCACTTTTTGATGCAGCATTACTTTCTGCTGT GTCTGCATTCTCCCATTTGCAAATCCCCATAGTTTCCCTGAATGAAAAGGGAAGAATAGTAGTTGTGTCCGAGGAAGGAAATGGAGGGAAGTTGGAGAAA GAAGCTGTAAACAAGGAGAAGAGGAAACTAACACTGAGCAGCATGCCTTTCTCGCTTACATCTGCACTTCATAAGAAGTACATTTTGGCAGATCCGACAT CAGAAGAAGAGTCCATCATGGAAACCCTCGTGACAGTAGTTATGGACTCGTCCGACAGACTCGTCTCCTTCTACAAGCCTGGTGGACCTGCTCTCGCATA TACTTCTCTCGTCACAGATTGTGTTGCATTGACACGGCAAAGAATGAAGGAACTTGAGAGTATCCTCGAAGAAGCCATCTCAGGCATGGAAGTTGACTAG
AA sequence Show only first row Show all	>Lus10021789 pacid=23159333 polypeptide=Lus10021789 locus=Lus10021789.g ID=Lus10021789.BGIv1.0 annot-version=v1.0 MESGDLSAEMEVDAFRRLFPLRFYERHLYESIRPDGRPLGKARDTTLALGAVASADGSALAKIGSTTMLAAIKMEVMTPSTDSPDEGSLAIEFHMPPICS PIVRPGRPAEAAPVVSKQLSDTILSSGMINLKELSLVSGKAAWMVYLDIYCLDADGALFDAALLSAVSAFSHLQIPIVSLNEKGRIVVVSEEGNGGKLEK EAVNKEKRKLTLSSMPFSLTSALHKKYILADPTSEEESIMETLVTVVMDSSDRLVSFYKPGGPALAYTSLVTDCVALTRQRMKELESILEEAISGMEVD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60080			3'-5'-exoribonuclease family p...		Lus10021789 [exp]	0	1
AT3G16780			Ribosomal protein L19e family ...		Lus10023387 [exp]	2.4	0.8762
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10031551 [exp]	6.9	0.8456
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10006609 [exp]	7.3	0.8504
AT5G28060			Ribosomal protein S24e family ...		Lus10004123 [exp]	8.1	0.8487
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10020398 [exp]	8.4	0.8428
AT5G06360			Ribosomal protein S8e family p...		Lus10021274 [exp]	9.9	0.8362
AT1G60080			3'-5'-exoribonuclease family p...		Lus10034605 [exp]	10.2	0.7904
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016432 [exp]	13.0	0.8224
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10028272 [exp]	14.1	0.8094
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10006914 [exp]	14.3	0.8420

Compare expression of checked genes

Lus10021789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.