Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01480 791 / 0 O-fucosyltransferase family protein (.1) AT1G14970 752 / 0 O-fucosyltransferase family protein (.1) AT1G35510 572 / 0 O-fucosyltransferase family protein (.1) AT1G38131 525 / 0 O-fucosyltransferase family protein (.1) AT1G38065 487 / 5e-169 O-fucosyltransferase family protein (.1) AT3G26370 308 / 6e-98 O-fucosyltransferase family protein (.1) AT4G38390 304 / 9e-97 RHS17 root hair specific 17 (.1) AT1G29200 295 / 1e-93 O-fucosyltransferase family protein (.1.2.3) AT4G16650 294 / 7e-93 O-fucosyltransferase family protein (.1) AT1G76270 289 / 1e-90 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034606 [exp] 996 / 0 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 888 / 0 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 887 / 0 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 572 / 0 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10001545 [exp] 523 / 0 AT1G35510 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10028080 [exp] 459 / 1e-158 AT1G38065 636 / 0.0 O-fucosyltransferase family protein (.1) Lus10025631 [exp] 457 / 6e-157 AT1G38065 635 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 322 / 3e-103 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 315 / 8e-101 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G130600 [exp] 830 / 0 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 820 / 0 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 594 / 0 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 510 / 3e-176 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 489 / 2e-168 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 322 / 3e-103 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 315 / 4e-101 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 310 / 5e-99 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 308 / 3e-98 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.011G068300 [exp] 302 / 4e-95 AT1G29200 737 / 0.0 O-fucosyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10021790 pacid=23159311 polypeptide=Lus10021790 locus=Lus10021790.g ID=Lus10021790.BGIv1.0 annot-version=v1.0 ATGCACGCCCCTAAACGGATCTCTCCCAGCGGTTACACGTCGCCGTCGCCACCGAATTCCCCAGTCCGCTCTCCTCTACCCCGCAGCCGGTCCACATCCG GCCGGTCGGCGAATCAACCGACCCTAGCTCATCGTCTCGCTTGTCTTCTCCTCTCCGTTCTCCTGCGTCGCCAGAGAATTTTCCTGTTCGCTCCGCTCAT CTACATCTCCGGGATGCTTCTGTACATGCGGACGACGTCGTTCGAGGTCGTCCCCAAGATTTCTCTCACGCCTGCTCCTGGCTCGATTTACAAGAGTCCT CTCGTTTACGAGAAGCTTCGGCCTGAAATGGATGCCGATAATTCTTCTGCTGATGCGCTATTAACTATATGGAAAGATTCTTACAAAAGAGGCGAGTGGA AACCATGTGTGAACCAGTCTTTGGAAGGAATACCTGCTTCTAATGGTTACATATATGTTGAAGCCAATGGTGGTTTGAATCAACAAAGGACATCGATATG TGATGCCGTTGCTGTTGCAGGCATTCTGAATGCAACACTCCTTGTCCCTACTTTCCATTACCATAGCATCTGGAAAGATCCCAGCACATTCCAAGACATT TATGATCAAGACTTCTTCTTCACTGCCTTACAGAACGAAGTGAGGGTAGTTGATAAGATTCCAGGATATCTTATGGAGCGTTTTGATCACAACTTCAGCA ATGTATTCAACTTTAGAGTAAAAGCATGGTCACGTATTGAGTATTACAAAGATGTTGTCCTCCCTCGGCTACTGGAAGAAAAAGTTATAAGGATTTCTCC GTTTGCACACCGATTGTCATTTGATGCTCCCCCAGCTGTCCAACGTCTTAGATGTATGGCAAATTATGTAGCTCTAAGGTTCTCAGAACCCATATTAACA ATGGGGGAATATCTCGTAGCTAGAATGAAGGAACTAAGTGCAAGCCATGGTGGGAAATATGTTTCTGTACATCTTCGCTTTGAGGAGGACATGGTTGCTT TCTCTTGTTGTGTGTTTGATGGCGGTGCTCAAGAAGACCGAGACATGAAAGCTGCAAGGGAGAGAGGATGGAGAGGGAAATTTACAAAACCTGGTCGAAC TCTACTTCCCGGAGCTATCAGACTTAACGGCAAGTGTCCCCTTTCTCCATTAGAGGTCGGTTTGATGCTGAGGGGAATGGGGTTCACCAAGGATACATAC ATATATTTAGCTTCTGGAAAGATATACAATGGCGAGAAGTATATGGCTCCATTGTTGGAAATGTTTCCAAATGTGCAGACAAAAGATACACTGGCGACCG AGGAAGAGCTTGCGCCGTTTAAGAATTTCTCTTCCAGGATGGCTGCAATAGACTACACTGTCTGTCTTCACAGTGAAGTGTTTGTGACAACTCAAGGTGG CAACTTCCCTCATTTTCTGTTAGGCCATCGGAGATTCTTGTACAGTGGACATGCCAAGGCAATTAAGCCAGACAAGCGCAAGTGGAAGAGTTTCAAAAAG CAAATGTTGAACATGCGGTCTAACAGCGATTCCAAGGGAAGTGAACTCAAGAGACTGAATGACTCCGTATTCTCTCATCCATGTCCCGATTGCATGTGCC GGTACAGCAAAGCAGGTGTCTTGAAACTATCATGA
AA sequence Show only first row Show all	>Lus10021790 pacid=23159311 polypeptide=Lus10021790 locus=Lus10021790.g ID=Lus10021790.BGIv1.0 annot-version=v1.0 MHAPKRISPSGYTSPSPPNSPVRSPLPRSRSTSGRSANQPTLAHRLACLLLSVLLRRQRIFLFAPLIYISGMLLYMRTTSFEVVPKISLTPAPGSIYKSP LVYEKLRPEMDADNSSADALLTIWKDSYKRGEWKPCVNQSLEGIPASNGYIYVEANGGLNQQRTSICDAVAVAGILNATLLVPTFHYHSIWKDPSTFQDI YDQDFFFTALQNEVRVVDKIPGYLMERFDHNFSNVFNFRVKAWSRIEYYKDVVLPRLLEEKVIRISPFAHRLSFDAPPAVQRLRCMANYVALRFSEPILT MGEYLVARMKELSASHGGKYVSVHLRFEEDMVAFSCCVFDGGAQEDRDMKAARERGWRGKFTKPGRTLLPGAIRLNGKCPLSPLEVGLMLRGMGFTKDTY IYLASGKIYNGEKYMAPLLEMFPNVQTKDTLATEEELAPFKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLLGHRRFLYSGHAKAIKPDKRKWKSFKK QMLNMRSNSDSKGSELKRLNDSVFSHPCPDCMCRYSKAGVLKLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01480			O-fucosyltransferase family pr...		Lus10021790 [exp]	0	1
AT2G01480			O-fucosyltransferase family pr...		Lus10034606 [exp]	2.0	0.8786
AT5G07740			actin binding (.1)		Lus10015724 [exp]	5.8	0.9070
AT5G22780			Adaptor protein complex AP-2, ...		Lus10019520 [exp]	8.9	0.8675
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10028154 [exp]	11.5	0.8596
AT3G58560			DNAse I-like superfamily prote...		Lus10016206 [exp]	14.8	0.8778
AT5G06970			Protein of unknown function (D...		Lus10008663 [exp]	15.6	0.8773
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10042785 [exp]	18.0	0.8248
AT5G16210			HEAT repeat-containing protein...		Lus10009154 [exp]	22.7	0.8740
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10031984 [exp]	25.9	0.8516
AT1G30010			Intron maturase, type II famil...		Lus10042828 [exp]	26.1	0.8552

Compare expression of checked genes

Lus10021790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.