Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033114 [exp] 173 / 4e-52 ND / Lus10014633 [exp] 130 / 3e-36 AT2G04865 61 / 2e-11 Aminotransferase-like, plant mobile domain family protein (.1) Lus10006165 [exp] 131 / 2e-35 AT5G45260 66 / 5e-12 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) Lus10011276 [exp] 129 / 9e-35 ND 42 / 2e-04 Lus10022091 [exp] 135 / 2e-34 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10008733 [exp] 120 / 1e-32 ND / Lus10008761 [exp] 127 / 5e-32 AT2G25010 79 / 1e-15 Aminotransferase-like, plant mobile domain family protein (.1) Lus10024786 [exp] 117 / 3e-31 ND 62 / 1e-11 Lus10004818 [exp] 114 / 2e-28 AT1G17930 56 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021792 pacid=23159352 polypeptide=Lus10021792 locus=Lus10021792.g ID=Lus10021792.BGIv1.0 annot-version=v1.0 ATGGAAGAAATTCAGCTACCCCCTAATTTAATTCAGGGCTCGGAGGACAGGTTTGCTATTTGCACCTTTCATCCTCCTACTGCTACTAGTTGTGTTGTTA TGTTACTGCTTTCCGGTAATTCTGGAAAGACGAGAAGGTTTGTCTTCTGTCGCATGGGTGATGAGGATTGGACCAGGCCACAACAAGCGCATGAACATCG TTGCAACTGTTATCCTTCTACCACATCTGGACGTCTTCGCCCAGACTATGGAGCTATTGCCAGCTTTAATGGCGATTTTCTTCTTCTTGCACGCTGCTGT GAAAGCCTCTTCAGGTTTCAGTTCAATCAAGATGATGATGGTTGCTGCTTTTCCTCTATCATTAAATTGAGCATTGGGAAACCTCCTAACTTTGCTTGCT TTGGGAATGCGGGATGCAGCAGCTGGTATATGGTTCAGTATTCCCCTACTGAACTTATAGCTGTTAGTGCGGCACACAGGTATGATGGTCAATCGGAATC ATCAATTGTTGACAATGGTTACATTGGCTTCCACTTGTACAAGCTGAATTTGGTGAAGGAGGGGAAGTTATCATGGCAAAGGATGCAAAGCTTGCCCAAA GATTGCTATCTTATTAGGCTCCCTATCGGGGTTTCCACTGGTTCGTCTCATGCTTCAGCGAGCGTTAGTGTTGCAGCTGGGAGAGATGCTCGTTTTGCTC CTGCCACGAGTACACATGGTGAACTGATAGATGAGGATGTCAAGACTACTGGGTCGTGGGAAACCTTTCCCGCACTTGGCTGCTCGAGGTCAGGGATAGA GGATGGTGGCCCGATTGCGATCAGTGTGATTCTTAGTTTCGGGGGTCACATTGCACATTATCTATGGGAGGTCGGTGCGGACTACCGTAACATCCGCGAT TTCAAGTTCTACACCCGTCCGGGTCATCTCAGGCATTTGCCAGTTGGAGGCGCTGCAGGTGGTGATGCACGATACCCTTGGTTGAAGGGTGTTGCGATGC AGGAGAAGTCAATGTTAGCCGTGGGGAGCGGTTTATTGGATGAGGATGCATACAGGGTCTTCATGTTTTGTCTGCTGGGTTCGACTCTGTTCACTGATAA TTCCGCCGATCGTACTCGTCTGGTGTTGTGGAAGTATTTGATGGGGGCGTGTCCAGTGTGTCATGATATGCTTGGGGATTGGGGCTCTAGCATGGATGTA CCACGAGCTGGGTAA
AA sequence Show only first row Show all	>Lus10021792 pacid=23159352 polypeptide=Lus10021792 locus=Lus10021792.g ID=Lus10021792.BGIv1.0 annot-version=v1.0 MEEIQLPPNLIQGSEDRFAICTFHPPTATSCVVMLLLSGNSGKTRRFVFCRMGDEDWTRPQQAHEHRCNCYPSTTSGRLRPDYGAIASFNGDFLLLARCC ESLFRFQFNQDDDGCCFSSIIKLSIGKPPNFACFGNAGCSSWYMVQYSPTELIAVSAAHRYDGQSESSIVDNGYIGFHLYKLNLVKEGKLSWQRMQSLPK DCYLIRLPIGVSTGSSHASASVSVAAGRDARFAPATSTHGELIDEDVKTTGSWETFPALGCSRSGIEDGGPIAISVILSFGGHIAHYLWEVGADYRNIRD FKFYTRPGHLRHLPVGGAAGGDARYPWLKGVAMQEKSMLAVGSGLLDEDAYRVFMFCLLGSTLFTDNSADRTRLVLWKYLMGACPVCHDMLGDWGSSMDV PRAG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021792 [exp]	0	1
AT5G59510		RTFL5, DVL18	DEVIL 18, ROTUNDIFOLIA like 5 ...		Lus10001569 [exp]	2.8	0.8963
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10007139 [exp]	3.5	0.9067
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	6.4	0.9160
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10033717 [exp]	7.3	0.9027
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042231 [exp]	7.5	0.9123
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10031127 [exp]	7.9	0.8636
AT4G12970		EPFL9, STOMAGEN	stomagen (.1)		Lus10009589 [exp]	9.5	0.8881
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10033755 [exp]	12.0	0.8915
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10009521 [exp]	13.0	0.9078
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10022020 [exp]	13.7	0.8954

Compare expression of checked genes

Lus10021792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.