Plant FIBer expression Database

Lus10021794 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003298
[exp]
104 / 4e-26 AT1G52950 48 / 7e-06 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10021794 pacid=23159304 polypeptide=Lus10021794 locus=Lus10021794.g ID=Lus10021794.BGIv1.0 annot-version=v1.0
ATGCCCATCCTTGCGGTTGAACTATACAGGGCCTTTCCTGATGCGGAAGCTGCAATATCGCCCTCGATTGAAGAGCTTCGTGCTCAAACTTTGACGTTTG
AGAATCTTTCTCTCAGGCGAACTCCTGAACAAAAGGTTCCCTCGATTGCTGCATCAATCTCTTATGCTTCGCAGCCATATGGTACTGCAACCATCAACAA
CTCGATCGATGACCCATTATCTGGTGATCCCTCGAGCGATGCTGCCTTGTCTGGTGACATTTCAAGTGACACTGAGTTGGCCAGTGGTTCAACAAGTTTG
GTTGCTTCTCCTATTAAAACCTTTGCTGCTCCTCGGACCGAACAGACTACAACGCGAGGTCCGAGGAAAAAGCCTGCTGCAACGACCTCGAAGAAGAATG
CGGCCCCGCGTGCCCGTAAGGCACGATCCACATCAAAGCCCGATCCTCAGTTGCCAACAGCAAAGACAGCTGCACCGTGTATGCGTGAGGCGCACTCTGT
TTTCGGGGTACCTATTACTGCCGACGAGCTATTAGGAACCTGTCCAGCTGATGATGAGGACGATGTTCCATTACATGTTTTTGCACAGCGTGCAAAGGAA
GCACGCCTACGATGCCTTTGTCTCTGCGAAGAAAAAACTGTTTCCGTCACCTTAGTTTCCTACATCCTACTCCCCCTATTTTGCCTCCTTTTAATGTCCG
CCGTTGGCCTCATGTACGGTTGTTTTGTCCCCACTGTTGTCTGTTAG
AA sequence
>Lus10021794 pacid=23159304 polypeptide=Lus10021794 locus=Lus10021794.g ID=Lus10021794.BGIv1.0 annot-version=v1.0
MPILAVELYRAFPDAEAAISPSIEELRAQTLTFENLSLRRTPEQKVPSIAASISYASQPYGTATINNSIDDPLSGDPSSDAALSGDISSDTELASGSTSL
VASPIKTFAAPRTEQTTTRGPRKKPAATTSKKNAAPRARKARSTSKPDPQLPTAKTAAPCMREAHSVFGVPITADELLGTCPADDEDDVPLHVFAQRAKE
ARLRCLCLCEEKTVSVTLVSYILLPLFCLLLMSAVGLMYGCFVPTVVC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10021794
[exp]
0 1
AT1G08320 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding pr... Lus10019543
[exp]
1.0 0.8399
AT1G02270 Calcium-binding endonuclease/e... Lus10030173
[exp]
2.0 0.8014
AT2G33980 ATNUDT22 nudix hydrolase homolog 22 (.1... Lus10041965
[exp]
6.6 0.7383
AT4G27290 S-locus lectin protein kinase ... Lus10038557
[exp]
7.0 0.6859
AT1G18880 NRT1.9 nitrate transporter 1.9, Major... Lus10015351
[exp]
7.3 0.6915
AT1G55760 BTB/POZ domain-containing prot... Lus10008348
[exp]
13.1 0.7389
AT4G12010 Disease resistance protein (TI... Lus10018021
[exp]
16.0 0.7131
AT2G23470 RUS4 ROOT UV-B SENSITIVE 4, Protein... Lus10022474
[exp]
18.0 0.6225
AT5G03530 ATRABALPHA, AtR... ARABIDOPSIS THALIANA RAB GTPAS... Lus10040423
[exp]
21.2 0.6802
AT3G48410 alpha/beta-Hydrolases superfam... Lus10004881
[exp]
33.2 0.6647

Lus10021794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.