Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01600 744 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 702 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 542 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 508 / 1e-174 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 451 / 4e-153 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 238 / 3e-70 ENTH/ANTH/VHS superfamily protein (.1) AT4G32285 230 / 3e-67 ENTH/ANTH/VHS superfamily protein (.1.2) AT4G02650 226 / 4e-66 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 194 / 6e-54 ENTH/ANTH/VHS superfamily protein (.1) AT2G25430 147 / 2e-37 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034610 [exp] 1048 / 0 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 865 / 0 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 865 / 0 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10025462 [exp] 565 / 0 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 469 / 6e-160 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10038122 [exp] 468 / 1e-159 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10003642 [exp] 336 / 2e-108 AT5G35200 380 / 2e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10015335 [exp] 285 / 2e-87 AT4G25940 385 / 6e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10001502 [exp] 234 / 2e-68 AT2G25430 914 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G132100 [exp] 858 / 0 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 845 / 0 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 602 / 0 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 580 / 0 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G125284 [exp] 473 / 2e-161 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T125107 [exp] 472 / 2e-161 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G065100 [exp] 461 / 6e-157 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T124907 [exp] 268 / 3e-86 AT5G35200 357 / 4e-122 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G118100 [exp] 258 / 5e-78 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G255000 [exp] 234 / 1e-68 AT2G25430 866 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10021796 pacid=23159315 polypeptide=Lus10021796 locus=Lus10021796.g ID=Lus10021796.BGIv1.0 annot-version=v1.0 ATGGGAACGCTTCAAACATGGAGGAAAGCCTATGGCGCTCTCAAAGACTCCACCAAAGTAGGCATCGCTCATGTCAATAGCGATTACGCGGACTTGGACG TGGCAATTGTCAAAGCAACGAATCATGTCGAGTGCCCTCCCAAAGAAAGAAATGTCAGGAAAATCTTGTTTGCAACTCAAGCCATTCGTCCTAGAGCTGA TGTTGCCTACTGTATCCACGCTCTTTCCCGGCGTTTGGCCAAGACGCATAATTGGACGGTGGCACTGAAAACGCTGATTGTCATACATAGACTTCTAAGG GAAGGTGACCCGACTCTGAGAGAAGAACTACTGAATTACTCCCAAAGAGGACGCATTCTCCAACTTTCCAATTTCAAGGACGATTCTAGTCCTATTGCAT GGGATTGCTCTGCTTGGGTACGTACGTACGCATTGTTTTTGGAGGAGCGTCTTGAATGTTTTAGAGTTTTGAAGTATGACATCGAAGTAGAGCGTCTCTC GAAACCCGCTCAGGGGGATGACAAGGGTTACAGCAGAACCAGAGACTTGGCTAGTGAAGAGCTACTGCATCAACTTCCTGTTTTACAACAGCTGATGTAC CGTCTTGTTGGTTGCCGGCCAGAAGGTGCAGCTGTCAGAAATTATGTAATTCAGTATGCTCTTGCTCTGGTGTTGAAAGAGAGCTTTAAAGTATATTGCG CTATCAATGATGGAATCATCAACCTTGTCGATAAGTTTTTTGAAATGCCAAGGCATGAAGCTATCAAAGCTCTTGATGTCTACAAACGAGCTGGTCAGCA GGCTGCTACTCTTTCCGAGTTCTACGAAGTGTGCAAAGGATTGGAACTTGCTAGAAACTTTCAGTTTCCTACCTTAAGAGAGCCTCCACAATTTTTTCTA ACAACCATGGAAGAGTACATACAAGAGGCACCTCGAGTTGTTTCTGTTCCAAACGAAACATTGCTCCAGTTGACGTACAGACCAGAAGAAAGTCCTTCTG AGGATGCTAAACCAAGTGATGAGCCAGAGCAACTTCCTGCGGATGTTATTGATGCTACACACGTAGAGGTTTCTCAGCCTCCTCCTGCCCCGACGTCACC TGTTGCTCCACAGAACGGCAGCATGGATACTGGAGATCTCTTGGGTTTGAGCAGTGATGCATCTCCACATGCATCTGCAATAGACGAACAAAATGCATTG TCTTTAGCTATTGTTCTGTCTGAAGCAGATGCTGCACCAACATTTAATTCTGGCGCTGTTCAACCCAAAGATTTTGAAGCCAGTGGATGGGAACTTGCCC TGGTTACCGCTCCTAGCAGCGACCTCTCATCAGTAAATGAGAGGCAGTTGGGTGGTGGATTAGACGCGCTAACTCTGAACAGCCTATACGACGATGGTGC TTATAGAGCAGCCCAGAAGCCAGTCTACGGAGCACCAGCACCGAACCCGTTCGAGGTGCACGACCCGTTTGCTCTGTCGACCAGCGTTGCTCCTCCACAG TCTGTGCAAATGGAAACAATGGCTCAACAGCAACAACAGCAAGTCAACCCCTTTGGTCCGTACCAGTCCCATTTTATGCAGCAGCAGCAGCAGCCATCAG AGGGATTGCAACCTCCTCAGCTGCCACAGCTGATGGCAGGAGCACATAATCCTTTTGGCGACGATGTGGCCTTCAGCGCCACCGAATTTACGGCTAATCA CCTCGATCATCCTCCTGCTTCTCAGGCTCACGGCAATAATCCTTTTGGAAGTACAGGTCTATTGTGA
AA sequence Show only first row Show all	>Lus10021796 pacid=23159315 polypeptide=Lus10021796 locus=Lus10021796.g ID=Lus10021796.BGIv1.0 annot-version=v1.0 MGTLQTWRKAYGALKDSTKVGIAHVNSDYADLDVAIVKATNHVECPPKERNVRKILFATQAIRPRADVAYCIHALSRRLAKTHNWTVALKTLIVIHRLLR EGDPTLREELLNYSQRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRVLKYDIEVERLSKPAQGDDKGYSRTRDLASEELLHQLPVLQQLMY RLVGCRPEGAAVRNYVIQYALALVLKESFKVYCAINDGIINLVDKFFEMPRHEAIKALDVYKRAGQQAATLSEFYEVCKGLELARNFQFPTLREPPQFFL TTMEEYIQEAPRVVSVPNETLLQLTYRPEESPSEDAKPSDEPEQLPADVIDATHVEVSQPPPAPTSPVAPQNGSMDTGDLLGLSSDASPHASAIDEQNAL SLAIVLSEADAAPTFNSGAVQPKDFEASGWELALVTAPSSDLSSVNERQLGGGLDALTLNSLYDDGAYRAAQKPVYGAPAPNPFEVHDPFALSTSVAPPQ SVQMETMAQQQQQQVNPFGPYQSHFMQQQQQPSEGLQPPQLPQLMAGAHNPFGDDVAFSATEFTANHLDHPPASQAHGNNPFGSTGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10021796 [exp]	0	1
AT2G16405			Transducin/WD40 repeat-like su...		Lus10028800 [exp]	2.0	0.8554
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10023796 [exp]	2.4	0.8416
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10034610 [exp]	2.8	0.8614
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	5.0	0.8358
AT1G77610			EamA-like transporter family p...		Lus10042700 [exp]	6.6	0.8142
AT5G46630			Clathrin adaptor complexes med...		Lus10030961 [exp]	7.0	0.8337
AT1G61850			phospholipases;galactolipases ...		Lus10007661 [exp]	9.6	0.8365
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10029025 [exp]	9.8	0.8302
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	10.8	0.8109
AT2G28780			unknown protein		Lus10040846 [exp]	14.1	0.7893

Compare expression of checked genes

Lus10021796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.