Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23260 255 / 3e-88 MMZ1 ,UEV1A UBIQUITIN E2 VARIANT 1A, MMS ZWEI homologue 1 (.1) AT1G70660 252 / 4e-87 MMZ2 ,UEV1B UBIQUITIN E2 VARIANT 1B, MMS ZWEI homologue 2 (.1.2) AT1G70650 253 / 4e-82 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT3G52560 222 / 3e-75 MMZ4 ,UEV1D ,UEV1D-4 MMS2 ZWEI HOMOLOGUE 4, ubiquitin E2 variant 1D-4 (.1.2.3.4) AT2G36060 218 / 8e-74 MMZ3 ,UEV1C UBIQUITIN E2 VARIANT 1C, MMS ZWEI homologue 3 (.1.2.3) AT1G50490 51 / 3e-08 UBC20 ubiquitin-conjugating enzyme 20 (.1) AT3G20060 48 / 3e-07 UBC19 ubiquitin-conjugating enzyme19 (.1.2) AT3G46460 46 / 2e-06 UBC13 ubiquitin-conjugating enzyme 13 (.1) AT5G25760 45 / 4e-06 PEX4, UBC21 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) AT3G13550 45 / 5e-06 EMB144, COP10, CIN4, FUS9 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034611 [exp] 296 / 3e-104 AT1G23260 266 / 1e-92 UBIQUITIN E2 VARIANT 1A, MMS ZWEI homologue 1 (.1) Lus10029415 [exp] 222 / 2e-75 AT3G52560 290 / 7e-103 MMS2 ZWEI HOMOLOGUE 4, ubiquitin E2 variant 1D-4 (.1.2.3.4) Lus10004211 [exp] 219 / 4e-74 AT2G36060 273 / 8e-96 UBIQUITIN E2 VARIANT 1C, MMS ZWEI homologue 3 (.1.2.3) Lus10005014 [exp] 49 / 2e-07 AT3G20060 292 / 1e-102 ubiquitin-conjugating enzyme19 (.1.2) Lus10019034 [exp] 49 / 2e-07 AT3G20060 292 / 1e-102 ubiquitin-conjugating enzyme19 (.1.2) Lus10016573 [exp] 49 / 3e-07 AT5G59300 291 / 6e-102 ARABIDOPSIS THALIANA UBIQUITIN CARRIER PROTEIN 7, ubiquitin carrier protein 7 (.1) Lus10040844 [exp] 48 / 3e-07 AT5G59300 290 / 1e-101 ARABIDOPSIS THALIANA UBIQUITIN CARRIER PROTEIN 7, ubiquitin carrier protein 7 (.1) Lus10009495 [exp] 44 / 3e-05 AT5G25760 273 / 1e-93 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) Lus10016670 [exp] 42 / 5e-05 AT5G56150 149 / 1e-46 ubiquitin-conjugating enzyme 30 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107700 [exp] 275 / 4e-96 AT1G23260 269 / 5e-94 UBIQUITIN E2 VARIANT 1A, MMS ZWEI homologue 1 (.1) Potri.008G133900 [exp] 264 / 1e-91 AT1G23260 258 / 1e-89 UBIQUITIN E2 VARIANT 1A, MMS ZWEI homologue 1 (.1) Potri.016G073100 [exp] 224 / 5e-76 AT3G52560 281 / 5e-99 MMS2 ZWEI HOMOLOGUE 4, ubiquitin E2 variant 1D-4 (.1.2.3.4) Potri.006G205700 [exp] 218 / 7e-74 AT3G52560 275 / 7e-97 MMS2 ZWEI HOMOLOGUE 4, ubiquitin E2 variant 1D-4 (.1.2.3.4) Potri.009G049600 [exp] 53 / 8e-09 AT3G20060 296 / 3e-104 ubiquitin-conjugating enzyme19 (.1.2) Potri.001G254500 [exp] 51 / 2e-08 AT3G20060 295 / 1e-103 ubiquitin-conjugating enzyme19 (.1.2) Potri.010G206832 [exp] 48 / 4e-07 AT3G46460 263 / 3e-91 ubiquitin-conjugating enzyme 13 (.1) Potri.008G053900 [exp] 47 / 1e-06 AT3G55380 287 / 7e-101 ubiquitin-conjugating enzyme 14 (.1.2) Potri.008G053800 [exp] 46 / 2e-06 AT5G59300 264 / 4e-91 ARABIDOPSIS THALIANA UBIQUITIN CARRIER PROTEIN 7, ubiquitin carrier protein 7 (.1) Potri.001G089300 [exp] 46 / 2e-06 AT3G13550 256 / 3e-88 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10021797 pacid=23159338 polypeptide=Lus10021797 locus=Lus10021797.g ID=Lus10021797.BGIv1.0 annot-version=v1.0 ATGAGCTCCGAAGCATCAAATGTTGTTGGTAAGTGGCTCTCCAGCTTCCCCTCTTCTGGCAAAACCCTAGTGCCAAGGAGTTTCAGACTCCTGGAAGAGC TTGAAAGAGGTGAAAAGGGCATTGGAGACGGAACTGTGAGCTATGGAATGGACGATGCTGATGACATCTTGATGCAGTCTTGGACCGGAACTATAATTGG TCCTCCTCATACTGTTCACGAAGGGCGCATCTACCAGTTGAAGTTGTTTTGTGGCAATGATTATCCGGAAAATCCGCCGAGCGTCAAGTTTCAAAGCCGT GTAAACATGACTTGTGTCAATCCTGAAACAGGAGTTGTTGAACCAAATCTCTTCCCCATGCTCGCTAATTGGCAAAGAGAATATACAATGGAGGATATAT TGGTTCAATTGAAGAAAGAAATGATGTTATCACACAACCGGAAGCTCGCTCAGCCTCCTGAAGGGAATGATGAAGGGAGGATTGACCACAAGGGATTGGT GTTGAAGTGCTGTATTCTATGA
AA sequence Show only first row Show all	>Lus10021797 pacid=23159338 polypeptide=Lus10021797 locus=Lus10021797.g ID=Lus10021797.BGIv1.0 annot-version=v1.0 MSSEASNVVGKWLSSFPSSGKTLVPRSFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTIIGPPHTVHEGRIYQLKLFCGNDYPENPPSVKFQSR VNMTCVNPETGVVEPNLFPMLANWQREYTMEDILVQLKKEMMLSHNRKLAQPPEGNDEGRIDHKGLVLKCCIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Lus10021797 [exp]	0	1
AT1G55340			Protein of unknown function (D...		Lus10013616 [exp]	5.2	0.8399
AT2G25310			Protein of unknown function (D...		Lus10001919 [exp]	10.6	0.8006
AT4G16710			glycosyltransferase family pro...		Lus10028587 [exp]	11.2	0.8012
AT4G22900			Protein of unknown function (D...		Lus10014139 [exp]	15.6	0.7528
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10038637 [exp]	18.3	0.8125
AT3G53850			Uncharacterised protein family...		Lus10004698 [exp]	24.2	0.8046
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Lus10039604 [exp]	31.4	0.7713
AT3G61370			Protein of unknown function (D...		Lus10027936 [exp]	37.8	0.7704
					Lus10040104 [exp]	41.5	0.7592
AT1G04290			Thioesterase superfamily prote...		Lus10019228 [exp]	44.0	0.7858

Compare expression of checked genes

Lus10021797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.