Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01650 471 / 7e-164 PUX2 plant UBX domain-containing protein 2 (.1) AT1G04850 51 / 1e-06 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) AT5G35690 51 / 2e-06 unknown protein AT5G48690 44 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034612 [exp] 723 / 0 AT2G01650 541 / 0.0 plant UBX domain-containing protein 2 (.1) Lus10037827 [exp] 49 / 8e-06 AT1G04850 590 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Lus10017103 [exp] 49 / 9e-06 AT1G04850 573 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Lus10002262 [exp] 45 / 0.0001 AT5G35690 585 / 0.0 unknown protein Lus10038183 [exp] 45 / 0.0002 AT3G07140 777 / 0.0 GPI transamidase component Gpi16 subunit family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G133700 [exp] 529 / 0 AT2G01650 497 / 4e-174 plant UBX domain-containing protein 2 (.1) Potri.002G244500 [exp] 50 / 1e-06 AT1G04850 311 / 1e-104 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.001G264500 [exp] 47 / 1e-05 AT3G27310 237 / 1e-78 plant UBX domain-containing protein 1 (.1) Potri.001G316400 [exp] 45 / 7e-05 AT1G04850 581 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.014G160400 [exp] 45 / 8e-05 AT5G35690 440 / 2e-146 unknown protein Potri.017G056900 [exp] 43 / 0.0003 AT1G04850 577 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain CL0072 [flax] [poplar] PF09409 [flax] [poplar] PUB PUB domain
Representative CDS sequence Show only first row Show all	>Lus10021798 pacid=23159320 polypeptide=Lus10021798 locus=Lus10021798.g ID=Lus10021798.BGIv1.0 annot-version=v1.0 ATGGATGATATGAAAGACAAGTTCAAGGGATTCGTAAAGAAAGTGTCATCTTCCTCCTCCGGTAAATTCAAAGGCCAAGGTCGAGTTCTCGGCACTAATT CTTCTTCTTCATCGTCCTCCGATTCCTATAATTCAGTTTACGCTCGTTTTTCTCAACCTGTTAATCCGAAACCCACTCCCAACCCATCTTCCCATTCCAA CTCCATACCGTCGCCTCAGAAGAGCTCAGCTCCGGTTCACGGAAGCAGCAAACCTGCTTCTTCGTCAGCCCCAATTCCCAAGCCCTCTAATGGATTCGAC GCTTTTGGTCCATTGATCACAAGCAGTGAAAGATCCAAGAATGGATATTCACTAAATGTGTTTGAATGTCCGATTTGTGGGCAAGCCTATAGATCGGAGG AAGATGTATCTGCTCATGTCGAGAGCTGCGTGACTGAAGGTGTCAGAGTTGCTGATGTCACTTCAAACGGTAGTGATGACAACAACAATGCTGTTTCTGA TGGTAAAATTGATGAAGAAGTAAGTTTGTTGGATGAGAGCTGTGTTGCTGCCTATTTGTCTGGGAAGCCACCTGAGGGTTCTCTGGAGGTTGTGCTGAGA CTGTTTAGGAATATTGTGAGGGACCCTGAGAATGTCAAGTTTAGGAGAGTCAGAATGGGGAACCCTAAGATTAGGGAAGCAGTGACTGATGTTGCAGGAG GGGTAGAGTTGTTGGAGCTTGCCGGGTTTGAGCTCAAGGAAGAAGGTGGAGAGATGTGGGCTCTGATGGAAGATGTTCCTGGGAAAGAGAGGATTGGTTT GATCAATAAGGTGATAGGATTCCTGGAACCTAGCAAGGTAGAGAATATGAAAGCATCTATAGTTCCAGTGGAGGAAGATCAGCCAGCTGAGCGGAAGAAG ATTGACAGACAGATCAAGGTGTTCTTTGCTGTTTCTGAAAATGTAGCAGCAAAAATTGAGGTGCCAGACTCGTTTTACAATCTGTCTGCCATTGAGCTAA AAAGAGAAGCAGATATGAGAAAGAAGAAGCTCGCTGAATCCCAGCTTCTGGTTCCTAAGTCATTTAGAGAAAAGCAGGCCAAAGCTGCCCGGAGGAAATA CACGAGGACTGTAGTTCGCATCCAATTTCCTGATGGAGTGGTTCTTCAAGGTGTATTTGCTCCTTGGGAGCCAACCACTGCCTTGTATGAGTTTGTCGGC TTGGCACTTAAAGATAACAGCTTGGAGTTCGACCTCATGCATCCAGTGATTGTGAAACGCCGGGTTATTCCACGTTCTGCCGAGGCAGGGGGGGGAAGCA TAACCCTGGATGATGAAGATTTAGTCCCTTCAGCTCTCATTAAGTTCAAACCTATTGAGACCGATTCATCTGTGTTCACTGGATTATGTAACGAGCTCCT GGAGATCAGCGAACCACTGACATGA
AA sequence Show only first row Show all	>Lus10021798 pacid=23159320 polypeptide=Lus10021798 locus=Lus10021798.g ID=Lus10021798.BGIv1.0 annot-version=v1.0 MDDMKDKFKGFVKKVSSSSSGKFKGQGRVLGTNSSSSSSSDSYNSVYARFSQPVNPKPTPNPSSHSNSIPSPQKSSAPVHGSSKPASSSAPIPKPSNGFD AFGPLITSSERSKNGYSLNVFECPICGQAYRSEEDVSAHVESCVTEGVRVADVTSNGSDDNNNAVSDGKIDEEVSLLDESCVAAYLSGKPPEGSLEVVLR LFRNIVRDPENVKFRRVRMGNPKIREAVTDVAGGVELLELAGFELKEEGGEMWALMEDVPGKERIGLINKVIGFLEPSKVENMKASIVPVEEDQPAERKK IDRQIKVFFAVSENVAAKIEVPDSFYNLSAIELKREADMRKKKLAESQLLVPKSFREKQAKAARRKYTRTVVRIQFPDGVVLQGVFAPWEPTTALYEFVG LALKDNSLEFDLMHPVIVKRRVIPRSAEAGGGSITLDDEDLVPSALIKFKPIETDSSVFTGLCNELLEISEPLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10021798 [exp]	0	1
AT1G45000			AAA-type ATPase family protein...		Lus10017972 [exp]	2.0	0.7694
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10012835 [exp]	3.6	0.7695
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10037188 [exp]	5.5	0.7436
AT5G26200			Mitochondrial substrate carrie...		Lus10025015 [exp]	6.5	0.7522
AT5G60160			Zn-dependent exopeptidases sup...		Lus10022460 [exp]	8.2	0.7494
AT1G52343			unknown protein		Lus10007686 [exp]	12.8	0.6686
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10011751 [exp]	13.0	0.7337
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10030485 [exp]	15.1	0.7394
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10006784 [exp]	20.3	0.7387
AT1G77280			Protein kinase protein with ad...		Lus10028661 [exp]	22.3	0.7118

Compare expression of checked genes

Lus10021798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.