Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22970 352 / 2e-120 unknown protein AT1G71150 341 / 4e-116 unknown protein AT1G22980 241 / 5e-77 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034613 [exp] 637 / 0 AT1G71150 369 / 2e-127 unknown protein Lus10007946 [exp] 199 / 5e-63 AT1G71150 144 / 4e-42 unknown protein Lus10007947 [exp] 144 / 2e-42 AT1G71150 102 / 3e-27 unknown protein Lus10013482 [exp] 62 / 2e-10 AT2G01110 441 / 2e-154 unfertilized embryo sac 3, TWIN-ARGININE TRANSLOCATION C, ALBINO AND PALE GREEN 2, Sec-independent periplasmic protein translocase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G126400 [exp] 471 / 3e-167 AT1G22970 363 / 7e-125 unknown protein Potri.010G117100 [exp] 350 / 8e-120 AT1G22970 283 / 2e-93 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021799 pacid=23159318 polypeptide=Lus10021799 locus=Lus10021799.g ID=Lus10021799.BGIv1.0 annot-version=v1.0 ATGGGGAAAAGGGAGAAAGAGCGGCTCATTCAAGTTCTGAATTCGCACCTTAACACGATCCACGATACCTTACAGGTTTTGGATCAAACACCAGCTTCGT CTTTGGACAAAGTGAGCTGGGATGACGTTCTGAAAATGGGAGATCAAGCCTACAGGCAAGCTACTATTGTTGGGATGCTTTGGACAGGAGAAAGGCCCGA AGATAAAGCGATTGAGGAGAACATGGCAAATTATTTCAATATCCTGCAAGGGTTCCTTTTACTTTCTCATGGAAGTAGAGTTGGAGCAGGGGCTACTCTT TCGACGAGTATCTATGCATCTGCAAAACATGTTGTTGATTGCAGTTTTAAGTTGATGAGTGAGACTGTTGCTTCATATGGATCCTGTAACAAAGACCTGA AGCTATTAGTACCACAGCTGGTTGGTGCAGTATGGGAAGCATGTACTGCGTTAAAGAAGACACCTTCAACTAATACTACAGCTATTGGCCGAGCAATGAC AAGAGTTGCAGTTTCAATGAAAGATGTTCTCCGCGAGATGAATGAACTGAAGCCCGAGTGTCCCAATCCCACTGTCTCTGATGATGCAGTTGCTGAAGGA GAAATCAGGATCCAAGAGAGCGGTGGTAGTAGCTTCAGCGACGACGATGATCTTGGTAACGACTTGTCGCCTGAAGACATGAAAGTTGCTGAGTTGGCAA CTGGGATCGTGTCGCAGGCACTTGTATTCATAAAGGAACTGGTCCGCACCATCTCTGGATTGATTAAGCTGGAAAAGCCTAATGACAGTGGCAGCTTTGT GGATACCTTAGAGAAGTTACTAAAACTGTGTCAGGGGATCGGAGAGCAGATTGATGAATTGGGAGCCTGTCTTTACCCTCCACAGGAGTTCCCCGCCATG AAGACTGCTTTGGATAAGATATCGAGCAAGGTTGACGAAGCGAGGGTAGGCGTGGAAAGTTTGAACTGCTCTGCAGAATCGTTCTTCCAGGGATGTACTG GTTTGAAGAGTTCAATAAAAGTAATGGAGAGAGAACTAGATTTCTCCATGACTGCTGATTTGGGTGATAAATTGCAGAATGTCAGTTTGAACCAGTGA
AA sequence Show only first row Show all	>Lus10021799 pacid=23159318 polypeptide=Lus10021799 locus=Lus10021799.g ID=Lus10021799.BGIv1.0 annot-version=v1.0 MGKREKERLIQVLNSHLNTIHDTLQVLDQTPASSLDKVSWDDVLKMGDQAYRQATIVGMLWTGERPEDKAIEENMANYFNILQGFLLLSHGSRVGAGATL STSIYASAKHVVDCSFKLMSETVASYGSCNKDLKLLVPQLVGAVWEACTALKKTPSTNTTAIGRAMTRVAVSMKDVLREMNELKPECPNPTVSDDAVAEG EIRIQESGGSSFSDDDDLGNDLSPEDMKVAELATGIVSQALVFIKELVRTISGLIKLEKPNDSGSFVDTLEKLLKLCQGIGEQIDELGACLYPPQEFPAM KTALDKISSKVDEARVGVESLNCSAESFFQGCTGLKSSIKVMERELDFSMTADLGDKLQNVSLNQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71150			unknown protein		Lus10021799 [exp]	0	1
AT1G51650			ATP synthase epsilon chain, mi...		Lus10034841 [exp]	1.0	0.8084
AT5G27430			Signal peptidase subunit (.1)		Lus10001092 [exp]	15.3	0.6761
AT1G12650			unknown protein		Lus10024493 [exp]	21.4	0.6988
AT4G29390			Ribosomal protein S30 family p...		Lus10002508 [exp]	22.6	0.6896
AT4G30820			cyclin-dependent kinase-activa...		Lus10022901 [exp]	23.0	0.6711
AT5G01750			Protein of unknown function (D...		Lus10020780 [exp]	23.8	0.5939
AT5G16950			unknown protein		Lus10026852 [exp]	26.5	0.6775
AT5G16060			Cytochrome c oxidase biogenesi...		Lus10033547 [exp]	29.1	0.6848
AT2G26470			unknown protein		Lus10038230 [exp]	33.3	0.6797
AT1G71150			unknown protein		Lus10034613 [exp]	36.0	0.6118

Compare expression of checked genes

Lus10021799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.