Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68070 340 / 1e-115 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G01735 319 / 5e-107 RIE1 RING-finger protein for embryogenesis (.1) AT1G12760 232 / 3e-72 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT3G61180 221 / 1e-68 RING/U-box superfamily protein (.1) AT4G11680 219 / 8e-68 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G63170 209 / 6e-64 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT4G32600 84 / 2e-17 RING/U-box superfamily protein (.1) AT1G80400 83 / 3e-17 RING/U-box superfamily protein (.1) AT4G26580 72 / 1e-13 RING/U-box superfamily protein (.1.2) AT5G55970 71 / 2e-13 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034587 [exp] 506 / 1e-177 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10041359 [exp] 195 / 2e-58 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10036569 [exp] 192 / 2e-57 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1) Lus10006313 [exp] 169 / 1e-48 AT4G11680 456 / 8e-161 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10029582 [exp] 147 / 5e-41 AT3G61180 315 / 3e-106 RING/U-box superfamily protein (.1) Lus10011475 [exp] 90 / 1e-19 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10023112 [exp] 85 / 1e-17 AT1G80400 447 / 1e-155 RING/U-box superfamily protein (.1) Lus10008106 [exp] 80 / 2e-16 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10013144 [exp] 79 / 6e-16 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G134900 [exp] 374 / 8e-129 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G106300 [exp] 353 / 2e-120 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.003G123300 [exp] 214 / 8e-66 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.002G155200 [exp] 188 / 8e-56 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.014G075000 [exp] 184 / 2e-54 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.001G371200 [exp] 84 / 1e-17 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.006G247000 [exp] 82 / 8e-17 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 81 / 3e-16 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.011G094800 [exp] 77 / 2e-15 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.004G122000 [exp] 65 / 2e-12 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10021801 pacid=23159298 polypeptide=Lus10021801 locus=Lus10021801.g ID=Lus10021801.BGIv1.0 annot-version=v1.0 ATGTCATCAACCAACTCCGCTCCTCCTCCAATCGACGCCTCCGCCGGTGACCCCCACGCCCCGCTTCTCCACTCCCGTCACCATGATCTTCCCAATCCTT CCTCCTCCTCCTCTTCCTCCTCTTCATCATCCTCTTCCATTTCTCCTCCGCCGACTCTCACCACCGGCCGCTCCACTACACTCGCAGTCCTCCTCGGCCG GGCCTCGGGGAGGCGAGGCCCTTCCCTCTTAGTCAGGGAATCCGCTGCGCGTGAGCTCGAGGAACGACGTGTCGACTGGGGATACTCCAAGCCTGTGGTC GCCGTCGACATGGTGTGGAACATTTCTTTCGTCCTTGTGTCCCTGACGATGTTGATCGTGACGTCCAGGGAGAGGCCGAACACGCCGATTAGGGTTTGGA TATGCGGCTACGCTCTTCAGTGCTTGATACACGTGGTGCTGGTGTGGATGGAGTTCAGGAGGAGGAACCGGTCGAGGGACGGTGATCGGAGGCGACGGAG CGATGAGGAGGAAGTGGAGAGAGGAAGGATTTCTGATGAGGATGACGATGGGAGTGATCGGAGCTCCTTCAACGCTGGTTCTCACGTTGGCCGTTTAATG ATTCCGAACAGTTTTGCCAAGCGATGCGAGTCGATGAATACAATGGCATCGTTCGTCTGGTGGATAGTTGGCTTCTATTGGGTTGTCTCTGGTGGCGATC TTCTGTTGCAGAGTGCTCCACGCTTGTACTGGCTGGCTGTGGTTTTTCTAGCATTTGATGTGTTCTTTGCCATATTCTGCGTTGTTTTGGCCTGTCTGAT TGGCATTGCTCTTTGCTGCTGCTTGCCGTGCATCATAGCCATTCTATATGCTGTTGCTGGACAGGAAGGTGCATCGGATGCCGACCTCAGTGTCCTCACA AAATATAGATTCCAGGCGTCTAGCAACGGTGATAAACCCAGTATTGAGGCAGGGAAAATGGTTCCAGCTGAGACTAGCAGTTTATGCTTAGCACAAGAAC GTACTCTACTGCCGGATGATGCTGAATGCTGCATATGTCTGACCTCTTACGAGGATGGAGCAGAGCTGAATGCCCTGCCATGCAATCACCACTTCCATTC GAGCTGCATTGTGAGATGGCTGAAGATGAATGCAACTTGTCCTCTCTGCAAGTACAACATTCTCAAAGGAAACGAGCAGCAGGTATGA
AA sequence Show only first row Show all	>Lus10021801 pacid=23159298 polypeptide=Lus10021801 locus=Lus10021801.g ID=Lus10021801.BGIv1.0 annot-version=v1.0 MSSTNSAPPPIDASAGDPHAPLLHSRHHDLPNPSSSSSSSSSSSSSISPPPTLTTGRSTTLAVLLGRASGRRGPSLLVRESAARELEERRVDWGYSKPVV AVDMVWNISFVLVSLTMLIVTSRERPNTPIRVWICGYALQCLIHVVLVWMEFRRRNRSRDGDRRRRSDEEEVERGRISDEDDDGSDRSSFNAGSHVGRLM IPNSFAKRCESMNTMASFVWWIVGFYWVVSGGDLLLQSAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASDADLSVLT KYRFQASSNGDKPSIEAGKMVPAETSSLCLAQERTLLPDDAECCICLTSYEDGAELNALPCNHHFHSSCIVRWLKMNATCPLCKYNILKGNEQQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10021801 [exp]	0	1
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10034587 [exp]	1.7	0.8452
AT5G64230			unknown protein		Lus10033177 [exp]	2.0	0.8675
AT3G16510			Calcium-dependent lipid-bindin...		Lus10006523 [exp]	3.5	0.8402
AT4G22240			Plastid-lipid associated prote...		Lus10001099 [exp]	4.2	0.8453
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040127 [exp]	10.2	0.8224
AT5G64230			unknown protein		Lus10010617 [exp]	10.5	0.8011
AT3G02720			Class I glutamine amidotransfe...		Lus10010964 [exp]	12.6	0.8127
AT4G25225			unknown protein		Lus10038922 [exp]	13.1	0.7586
AT5G42050			DCD (Development and Cell Deat...		Lus10023059 [exp]	13.4	0.8199
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Lus10000966 [exp]	13.4	0.8039

Compare expression of checked genes

Lus10021801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.