Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68040 203 / 5e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G15125 191 / 3e-58 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38100 190 / 4e-58 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G37970 189 / 8e-57 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G37990 179 / 2e-53 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38780 178 / 2e-53 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G44840 163 / 1e-47 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G44870 163 / 2e-47 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G44860 160 / 1e-46 FAMT farnesoic acid carboxyl-O-methyltransferase (.1) AT5G55250 157 / 6e-45 AtIAMT1, IAMT1 IAA carboxylmethyltransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041380 [exp] 172 / 4e-51 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10043177 [exp] 163 / 4e-47 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10036547 [exp] 152 / 5e-43 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036550 [exp] 150 / 2e-42 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025993 [exp] 149 / 2e-41 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10036548 [exp] 149 / 2e-40 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028500 [exp] 141 / 1e-39 AT5G37990 187 / 6e-57 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10032569 [exp] 139 / 8e-39 AT5G55250 400 / 2e-139 IAA carboxylmethyltransferase 1 (.1.2) Lus10041776 [exp] 132 / 1e-35 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G016102 [exp] 233 / 2e-74 AT1G68040 315 / 6e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G016112 [exp] 232 / 3e-74 AT1G68040 319 / 2e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G136300 [exp] 225 / 2e-71 AT1G68040 379 / 7e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122000 [exp] 218 / 8e-69 AT5G37970 327 / 7e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G104800 [exp] 217 / 1e-68 AT1G68040 328 / 4e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122900 [exp] 215 / 2e-67 AT1G15125 295 / 5e-98 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122700 [exp] 213 / 9e-67 AT5G38780 322 / 2e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G121800 [exp] 206 / 6e-64 AT5G37990 327 / 8e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122950 [exp] 201 / 3e-62 AT1G15125 321 / 4e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G049900 [exp] 201 / 4e-62 AT1G15125 309 / 1e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03492 [flax] [poplar] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10021802 pacid=23159292 polypeptide=Lus10021802 locus=Lus10021802.g ID=Lus10021802.BGIv1.0 annot-version=v1.0 ATGGACATCCAAGACCACTATGGCGGCCACGATCACTCTTCCGCCGGCGACCATTACCTCCATCAACATCAGGGTCACGTGGGAAATTCCACGAAAAGCA CCAACGAAGTAATCGAAGAAACCATACTAGACAAAATGGACGCCCTCCGAATAATACGCTCCACGTCAGCATCCTACGCGTTCCGCCTGGCAGACTTAGG ATGCTCATCCGGCCCAAAATCCCTCCACGTCATCGACTCCATTGTCCACGCCATCAAATCCAAATTCACCCACCAAACCGCCGCCGGCCTCTTACTCCAC CACCGGCCGGAGTTCCAAGTCTTCTTCAACGACCTCCCTTACAACGACTTCAACTCCCTCTTCGCCACCCTTCTCGACTACCGAACGGACCATGACCGTG ATCAATATTTCGCGGCCGGGGTGGCGGGGTCGTTCCACGGGCGGCTGTTCCCGGAATCCTCCCTTCACTTCGTCCACTGCTCTTACTCCTTGCAGTGGAT GTCTCCGCCGGCGTCGGCTGAGGGTGGCCGGGAGTGGAATAGAAGGAGAATTCATTACGTAAATGCGGGAAGAGACGTCTATGAGGCGTATAAGGAGAGG TTTCGTAGGGATGTCGGGGGGTTTCTTGAGGCTAGAGCGATGGAGATTGTGGAAGGTGGATTGATGGCCATTGTTATACCATCGATGGCGGATGGAGTTT CCAACTCGGTTTTCCCACTTGGGCTGGTTTTTAATCACTTGGGCACTTGCCTCCTTGAGCTTTCCAAAGAGGGGATAGTATCTGAAGCCGACATCGATTC ATTCAACATCCCAATGTACTTGCCCACCGAAACTGAGATGAGGGAGCTAATACAAGACAACGGTTGTTTCAACATCGAGAGGACCCACCACCTTTCCTGC GGCGGCGACGCCGGGAAACTGAGATGA
AA sequence Show only first row Show all	>Lus10021802 pacid=23159292 polypeptide=Lus10021802 locus=Lus10021802.g ID=Lus10021802.BGIv1.0 annot-version=v1.0 MDIQDHYGGHDHSSAGDHYLHQHQGHVGNSTKSTNEVIEETILDKMDALRIIRSTSASYAFRLADLGCSSGPKSLHVIDSIVHAIKSKFTHQTAAGLLLH HRPEFQVFFNDLPYNDFNSLFATLLDYRTDHDRDQYFAAGVAGSFHGRLFPESSLHFVHCSYSLQWMSPPASAEGGREWNRRRIHYVNAGRDVYEAYKER FRRDVGGFLEARAMEIVEGGLMAIVIPSMADGVSNSVFPLGLVFNHLGTCLLELSKEGIVSEADIDSFNIPMYLPTETEMRELIQDNGCFNIERTHHLSC GGDAGKLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10021802 [exp]	0	1
AT5G66780			unknown protein		Lus10024013 [exp]	2.2	0.9112
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10005930 [exp]	10.4	0.7896
					Lus10034388 [exp]	13.5	0.8868
					Lus10019564 [exp]	17.7	0.8787
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10019419 [exp]	20.2	0.8772
					Lus10010778 [exp]	22.6	0.8772
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10030403 [exp]	22.8	0.8489
					Lus10011061 [exp]	24.7	0.8772
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10026660 [exp]	26.7	0.8772
					Lus10034512 [exp]	28.6	0.8772

Compare expression of checked genes

Lus10021802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.