Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24290 355 / 5e-116 MAC/Perforin domain-containing protein (.1.2) AT1G28380 341 / 1e-110 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G29690 311 / 1e-99 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) AT1G14780 254 / 2e-77 MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034586 [exp] 809 / 0 AT1G14780 567 / 0.0 MAC/Perforin domain-containing protein (.1) Lus10041285 [exp] 353 / 2e-115 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10037426 [exp] 353 / 5e-115 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1) Lus10025453 [exp] 330 / 3e-106 AT1G28380 745 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10012717 [exp] 322 / 3e-103 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 322 / 3e-103 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10029279 [exp] 317 / 5e-102 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 313 / 2e-100 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10037363 [exp] 292 / 5e-92 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G136401 [exp] 541 / 0 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.010G104600 [exp] 535 / 0 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.003G006500 [exp] 363 / 2e-119 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.002G234700 [exp] 362 / 1e-118 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1) Potri.011G057100 [exp] 348 / 1e-113 AT1G28380 790 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.004G047700 [exp] 343 / 2e-111 AT1G28380 809 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.019G001000 [exp] 338 / 1e-109 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.001G305600 [exp] 332 / 3e-107 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.004G064000 [exp] 314 / 8e-101 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.011G075500 [exp] 307 / 4e-98 AT1G29690 890 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF01823 [flax] [poplar] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Lus10021803 pacid=23159353 polypeptide=Lus10021803 locus=Lus10021803.g ID=Lus10021803.BGIv1.0 annot-version=v1.0 ATGGCGGGTGAGCCGCCGCCGCCAAACGGAATCGCTGAAAGGGCTATCGCCGGATTGGGAAGAGGTTTCGACTTCACCTCCGATTTCAAGCTAAAATTCT GCAAAGGGAGAGACCGGCTCGTCCAGCTGAGCGACACGACGACGCCGGAGCTTGCGATCCCTGGATACGGCGTCGTTTCGGGTGTGTCGGGGGACATAAG GTGCGACAAGGGAGACCGGGTTAGGCACCAGTCGGATGTGCTGGAGTTCGGGCAGATGTCGGAGCTGTTCAACTTGACGTCGTCGGTTTCCGGTAAAATT CCTTCGGGTCATTTCAATTCGATGTTCGGGTTCGAGAGCGGGTCGTGGGGGCCCGACGCGAAGAACAACAAGTGTTTGGGGCTGGACGGGTACTATATTG TGCTGTTCAGTGTTCATGTTGATCGGTACCCGCTTTTGCTCCGGGATGAGGTCCGAAACGACGTGCCGTCTTGTTGGGATCCCTCTGCTCTTGCCAGGTT TATAGAAAAGTATGGGACACATGTAATAGTCGGAGTGAGTGTGGGAGGGAGCGACGTGGTGGTGGTGAGACAAGACAAATCTTCCAAACTGGAAACTTCC CTCGTCAAGAAACACCTCGACGATCTTGCTGACCAGCTCTTCACCGGAGGGGATCCGAGTGTAAGCAGCCACTGCGAGTGGCTACCAACAGTAGCATCCT CGCCGGATGCAATTCATTTCGACTTCATCCCCATTACTTCTCTCCTCAAAGGTGTTCCTGGCAAAGGCTTCCTCTCCCATGCCATCAACCTTTACCTCAG ATATAAGCCTCCCTTGTCAGATCTGCAATACTTTCTGGATTTCCAATCTCACAAGATGTGGGCTCCAATCCACAACGACCTCCCACTGGGCCCAGTTAGA AAAATCACCAATGCTTCCCCATCTCTTCAGCTCACTGTCATGGGCCCTAAACTCTACGTCAATACAGCTCAGGTTATAGTTGGAAGTAAGCCTGCTACTG GAATGCGATTCTTTCTCGAAGGCATGAAAAACAACAGGTTAGCAATACATCTACAACACCTTTCCAACACGCCAACAATGATTTCCAACAGCTTAAACGA CGCCGTTCCCACCACTTCATTCTGGCGTAGCTCCGACGAGACGCCCAACCACGAAGCCTATCTAGAACCCATCTCCGGCAAAAAATTCTCCCACGTCTGC ACTTCCCCCATCGCCCACGACGACCCTTCTCACAGCTTGACCGCCGCCGCCGCCGTCTCCGACCAGAATTGCGCCGGAGCATCATCATACATCGTAACCG GAGCCCAGCTCCACGTCACCAAAAACGGCGGAGCAGGCGGGGGGACGCACACCGATGTCCGTGTGTCTATTTTCTGCTATATCGGGGAACTTGGGCAAGG AAAAGGAAGCGGCGACAAGTTCAGCTGTGATGGTGGTGGATTCAGGAGTGTTTCCGACGGGGCCGCCTGTGCCGGTGCAGGCGCAGAGGATGCTGAAGTA TGTGGACACGTGTCATATGATCAGAGGGCCAGCGGATAG
AA sequence Show only first row Show all	>Lus10021803 pacid=23159353 polypeptide=Lus10021803 locus=Lus10021803.g ID=Lus10021803.BGIv1.0 annot-version=v1.0 MAGEPPPPNGIAERAIAGLGRGFDFTSDFKLKFCKGRDRLVQLSDTTTPELAIPGYGVVSGVSGDIRCDKGDRVRHQSDVLEFGQMSELFNLTSSVSGKI PSGHFNSMFGFESGSWGPDAKNNKCLGLDGYYIVLFSVHVDRYPLLLRDEVRNDVPSCWDPSALARFIEKYGTHVIVGVSVGGSDVVVVRQDKSSKLETS LVKKHLDDLADQLFTGGDPSVSSHCEWLPTVASSPDAIHFDFIPITSLLKGVPGKGFLSHAINLYLRYKPPLSDLQYFLDFQSHKMWAPIHNDLPLGPVR KITNASPSLQLTVMGPKLYVNTAQVIVGSKPATGMRFFLEGMKNNRLAIHLQHLSNTPTMISNSLNDAVPTTSFWRSSDETPNHEAYLEPISGKKFSHVC TSPIAHDDPSHSLTAAAAVSDQNCAGASSYIVTGAQLHVTKNGGAGGGTHTDVRVSIFCYIGELGQGKGSGDKFSCDGGGFRSVSDGAACAGAGAEDAEV CGHVSYDQRASG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Lus10021803 [exp]	0	1
AT5G21280			hydroxyproline-rich glycoprote...		Lus10009801 [exp]	12.4	0.7737
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Lus10011085 [exp]	13.0	0.7399
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10032514 [exp]	13.5	0.7868
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10012144 [exp]	47.5	0.7322
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10022434 [exp]	47.7	0.7531
AT3G09010			Protein kinase superfamily pro...		Lus10002494 [exp]	58.1	0.7252
AT1G03080			kinase interacting (KIP1-like)...		Lus10014687 [exp]	64.0	0.7528
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10000988 [exp]	119.0	0.6934
AT1G06330			Heavy metal transport/detoxifi...		Lus10001892 [exp]	142.1	0.6895
AT5G45280			Pectinacetylesterase family pr...		Lus10033301 [exp]	174.1	0.7015

Compare expression of checked genes

Lus10021803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.