Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67980 190 / 2e-61 CCOAMT caffeoyl-CoA 3-O-methyltransferase (.1.2) AT1G67990 171 / 5e-54 ATTSM1 TAPETUM-SPECIFIC METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G24735 162 / 3e-50 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G26220 120 / 4e-34 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G34050 102 / 6e-28 CCoAOMT1 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G61990 92 / 1e-22 OMTF3 O-MTase family 3 protein, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G62000 87 / 1e-20 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034584 [exp] 187 / 5e-60 AT1G67980 299 / 2e-103 caffeoyl-CoA 3-O-methyltransferase (.1.2) Lus10014074 [exp] 105 / 4e-28 AT4G34050 465 / 1e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10027888 [exp] 105 / 5e-28 AT4G34050 461 / 9e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10002837 [exp] 105 / 5e-28 AT4G34050 462 / 2e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10019841 [exp] 105 / 6e-28 AT4G34050 466 / 8e-169 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10009484 [exp] 103 / 3e-26 AT4G26220 255 / 1e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036339 [exp] 80 / 5e-18 AT3G62000 385 / 9e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010276 [exp] 77 / 2e-17 AT3G62000 269 / 1e-90 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10032698 [exp] 44 / 1e-05 ND 134 / 1e-40
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G104400 [exp] 201 / 2e-65 AT1G67980 335 / 6e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.008G136600 [exp] 137 / 2e-40 AT1G67980 337 / 1e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.018G070300 [exp] 116 / 2e-32 AT4G26220 325 / 1e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G304800 [exp] 108 / 5e-29 AT4G34050 455 / 1e-164 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.009G099800 [exp] 106 / 2e-28 AT4G34050 465 / 2e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G183600 [exp] 80 / 5e-18 AT3G62000 404 / 3e-143 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01596 [flax] [poplar] Methyltransf_3 O-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10021804 pacid=23159339 polypeptide=Lus10021804 locus=Lus10021804.g ID=Lus10021804.BGIv1.0 annot-version=v1.0 ATGGACTTGCCACACAAAGGAATCCTCCAGAGCCCTGACCTCGCAAAGTATATATATGAAACAAGCGTATATCCAAGAGAACATGAGCAATTGATGAAAA TACTGGAAGCTACCGTAGCCCAATACGGCAACATGGCGGAGAAGGTGGTGCCGGTGGATGAAGGGAGATTCTTGTCGCTGTTAGTGAAGCTTTTGAACCT AAAGAGGACGCTTGAGATTGGTGTTTTCACCGGCTACTCCCTTCTTTCCACCGCCTTAGCCCTTTCTGACGATGCTCTGGGAGAGGAAGCATTGTATGAC TTTGCATTCGTGGACGCAGACAAACCGAGCTACAAGGACTACCACGAGCAGCTGGTGAAGCTGGTGAAGGTCGGAGGCTTGATCGCCTACGACAACACTC TCTGGTTCGGATTCGTTGCCAAGGATGAGGGTGAGGTCCCGGAGCGGTTCAGGGGTGATAGGAAGGACATCATGGAGCTGAACAAGGTATTGGCTACCGA TCCGAGGGTGGATGTTGCTCAGATTTCTGTGGGAGATGGGATCACTTTGTGCAGGCGGATTCTGTAG
AA sequence Show only first row Show all	>Lus10021804 pacid=23159339 polypeptide=Lus10021804 locus=Lus10021804.g ID=Lus10021804.BGIv1.0 annot-version=v1.0 MDLPHKGILQSPDLAKYIYETSVYPREHEQLMKILEATVAQYGNMAEKVVPVDEGRFLSLLVKLLNLKRTLEIGVFTGYSLLSTALALSDDALGEEALYD FAFVDADKPSYKDYHEQLVKLVKVGGLIAYDNTLWFGFVAKDEGEVPERFRGDRKDIMELNKVLATDPRVDVAQISVGDGITLCRRIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24735			S-adenosyl-L-methionine-depend...		Lus10021804 [exp]	0	1
					Lus10021782 [exp]	3.5	0.9983
AT1G33530			F-box family protein (.1)		Lus10014984 [exp]	4.9	0.9659
					Lus10023587 [exp]	4.9	0.9983
AT3G29410		AtTPS25	Terpenoid cyclases/Protein pre...		Lus10038330 [exp]	5.5	0.9505
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	6.0	0.9983
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	6.9	0.9983
AT1G67623			F-box family protein (.1)		Lus10030790 [exp]	7.0	0.8960
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10031542 [exp]	7.7	0.9983
AT4G29250			HXXXD-type acyl-transferase fa...		Lus10028335 [exp]	8.1	0.9407
					Lus10007927 [exp]	8.5	0.9983

Compare expression of checked genes

Lus10021804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.