Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01770 388 / 3e-138 ATVIT1, VIT1 vacuolar iron transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001589 [exp] 358 / 4e-126 AT2G01770 358 / 5e-126 vacuolar iron transporter 1 (.1) Lus10003704 [exp] 254 / 7e-85 AT2G01770 315 / 1e-108 vacuolar iron transporter 1 (.1) Lus10003706 [exp] 129 / 3e-36 AT2G01770 115 / 1e-30 vacuolar iron transporter 1 (.1) Lus10025685 [exp] 46 / 8e-06 AT3G43660 241 / 4e-81 Vacuolar iron transporter (VIT) family protein (.1) Lus10018150 [exp] 42 / 0.0002 AT3G43660 244 / 2e-82 Vacuolar iron transporter (VIT) family protein (.1) Lus10034583 [exp] 0 / 1 AT2G01770 317 / 2e-111 vacuolar iron transporter 1 (.1) Lus10001588 [exp] 0 / 1 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G104200 [exp] 374 / 2e-132 AT2G01770 384 / 1e-136 vacuolar iron transporter 1 (.1) Potri.010G104100 [exp] 351 / 1e-123 AT2G01770 320 / 2e-111 vacuolar iron transporter 1 (.1) Potri.014G077600 [exp] 68 / 3e-13 AT2G01770 68 / 2e-13 vacuolar iron transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01988 [flax] [poplar] VIT1 VIT family
Representative CDS sequence Show only first row Show all	>Lus10021809 pacid=23159324 polypeptide=Lus10021809 locus=Lus10021809.g ID=Lus10021809.BGIv1.0 annot-version=v1.0 ATGGCGACACAACCAGCAATCATCGAGCCCGAGAAGCAAACCTTACTCAACCACCACAAGGAGAAGCACTTCACAGCCGGAGAGGTCGTCCGTGACATTA TCATCGGCGTCTCCGACGGCCTCACCGTCCCCTTCGCCCTCGCCGCTGGCCTCTCTGGCGCCAATGCCCCTTCCTCCATCGTCCTCACTGCTGGCCTCGC CGAAGTCGCCGCCGGCTCCATCTCCATGGGCCTCGGAGGGTATTTGGCGGCAAGGAGCGAGGCGGACCATTACTCGAGGGAATTAAAGAGAGAGCAGGAA GAGATCGTCGCCGTTCCGGATACGGAGGCGGCAGAGGTGGCGGAGATACTGGCGGATTACGGGGTTCAGCCTCACGAGTACGCCCCCGTGGTGAACGCTC TCAGGAAGAATCCTCAAGCTTGGCTCGATTTCATGATGAAGTTTGAGCTTGGATTGGAGAAACCAGACCCAAGAAGGGCATTGCAAAGTGCATTGACAAT AGCCATAGCCTACATAATCGGTGGACTGGTGCCTCTGATTCCCTACATGTTCATCCCGAGGGCACAGGACGCGGTGATTGCTTCCGTAGTTGTGACGCTG ATAGCTCTGCTGTTGTTTGGGTACGCAAAGGGCCGGTTCACGGGGAGCAGACCTTTCATGAGTGCATTCCAAACTGCACTCATCGGTGCCATTGCTTCTG CCGCTGCGTTCGGCATTGCTAGAGCTGTTCAAACTTGA
AA sequence Show only first row Show all	>Lus10021809 pacid=23159324 polypeptide=Lus10021809 locus=Lus10021809.g ID=Lus10021809.BGIv1.0 annot-version=v1.0 MATQPAIIEPEKQTLLNHHKEKHFTAGEVVRDIIIGVSDGLTVPFALAAGLSGANAPSSIVLTAGLAEVAAGSISMGLGGYLAARSEADHYSRELKREQE EIVAVPDTEAAEVAEILADYGVQPHEYAPVVNALRKNPQAWLDFMMKFELGLEKPDPRRALQSALTIAIAYIIGGLVPLIPYMFIPRAQDAVIASVVVTL IALLLFGYAKGRFTGSRPFMSAFQTALIGAIASAAAFGIARAVQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10021809 [exp]	0	1
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10017856 [exp]	1.7	0.9497
AT4G37810			unknown protein		Lus10007240 [exp]	3.2	0.9347
AT1G13290	C2H2ZnF	WIP6, DOT5	WIP domain protein 6, DEFECTIV...		Lus10021700 [exp]	5.5	0.9271
AT5G08250			Cytochrome P450 superfamily pr...		Lus10013438 [exp]	5.9	0.9247
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10019407 [exp]	7.3	0.9327
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022505 [exp]	10.2	0.9304
AT3G47570			Leucine-rich repeat protein ki...		Lus10030852 [exp]	10.4	0.8917
AT5G18880			RNA-directed DNA polymerase (r...		Lus10023044 [exp]	11.0	0.9146
					Lus10010481 [exp]	13.0	0.9282
AT3G45070			P-loop containing nucleoside t...		Lus10041611 [exp]	13.0	0.8861

Compare expression of checked genes

Lus10021809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.