Plant FIBer expression Database

Lus10021811 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80910 655 / 0 Protein of unknown function (DUF1712) (.1)
AT1G16020 650 / 0 Protein of unknown function (DUF1712) (.1), Protein of unknown function (DUF1712) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034582
[exp]
995 / 0 AT1G80910 699 / 0.0 Protein of unknown function (DUF1712) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G137000
[exp]
769 / 0 AT1G16020 720 / 0.0 Protein of unknown function (DUF1712) (.1), Protein of unknown function (DUF1712) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence
>Lus10021811 pacid=23159300 polypeptide=Lus10021811 locus=Lus10021811.g ID=Lus10021811.BGIv1.0 annot-version=v1.0
ATGGGCTTGGCGTCCGTTAATACCGTCAGTGAAGGCATGCTACTCTGTATATTTGATTTGAGAAGAGGACAGCAGGAAGGGCAGGAGCTGAACAAGATTT
TGTTCTTCTTTCCCGCTGACTTGCCTTTCTCGTCCCAGCTTTCCGTCATTGGACTCAGTGAAGGGCTCATAACTTTTACAAGAATCTTCTCTCCAGATGC
GGCTTGTGAAGTGATAGAAGCAGAGAGGCACTCCCATATCTTTTATGAAGCAGAACCAGACATTTGGATGGTGATGGTTGTGGAGAAAAGTAAGGAATCA
AAAACCTCATGGCAGGTTGATGCATTACGGAAAGTTCTCAAAGAAGTTCACTCACTTTTCGTTTTCTTTCATGGAAAAATGAGATCAATGCTTGAGCGGG
AGACTAGTGGAGGTCTAATTCGCTCGCATTTATATCCTTTCATCACAGATTATCTTAGCGCATACCAAAAGCAGTCTCTATTGTGTAACTGCTGCTGGGA
TTTTCTTGTTGGGAAGAAGCTCCAGTTACCATCATTTCATGATTGTTTGGTGGAGCGTGGAACTGTTCAAATGCTTACTGTTGGGAGGGAAGCAGCACTT
GAAGTCCAGTCACTTGTCAGAGTACTAGAATCTTCTGCTGGAACCCCATCTTGCTACTCTCTGGTTTTGTTCCAGGACCTGATTGTCTCAACCACACTTT
CTCCTGATGACACCATAAGTATGTTTACTTATGCAGTTCTAAGGTTGACACCTCATGCTTTGTTATCTGGAGCAAGTTCGTGGTCTTATTTACAAACAAA
AAATAGTGCAGGATCTCAGGTTGCTGTACTATCTGCTATCAGCAACTCTGGGTCAGTTTCAGATAATATATATCGGCCACAGGATACATTAATTAACCAA
GACCTTGTAAAAAGGCCATTACATCAGAATAGCTGGTCTAAAGGGAAGGATGGTTTTCTTACGTCTGATATTTGGGGAACTGGAAGTGATAATCGAACTT
CTGCTACCCCAATAGTTTACCTCCAGCTGACTGAGGAAAGCATGTATCTGTGTGCCTATCAATATAAAAGTCTGACCATAATCCTTCTGGTTCCTGTTTC
CGCCATTCTAAATGGGGAGCAGGGTGTTTCACTGGTGAAGCAGCAAATCTTGGAAAATGCCTCACTTAAAGTATTGAAGGTTGAGGAGAAACTGTCAAAG
GGATGGGGTGGGGAAAATGCTTATCATGTTAGTGGCTATCGGTACTTACTGATTGATGATGAAAGAGGTGTATCCAGAGCTTCTCCTCCAGCAAAGGTCA
TGACTCTGACCAAGGAATCCTTACTGGGCATGAGCAAGGTGAGAGAAGAGGTCAACTTGGAGAAGATGAGAGCACAATCCAACAGCAGTGTAAGCAGTGA
CAAAGAATTGGAAATATGTGTTAGAGGAAAAAATGGCGCGTGGGTTATTGCACGAACATCAAGAGGGAAGGAGCTATATATGGTTCTAGAGAAAGCCAGC
GAAACACTTCTGTATGCATCTGAAGCTGTGGAGAAGTTCAGCAACAGATACTGCGGCGGGGCATTCTCTTTAGATTAA
AA sequence
>Lus10021811 pacid=23159300 polypeptide=Lus10021811 locus=Lus10021811.g ID=Lus10021811.BGIv1.0 annot-version=v1.0
MGLASVNTVSEGMLLCIFDLRRGQQEGQELNKILFFFPADLPFSSQLSVIGLSEGLITFTRIFSPDAACEVIEAERHSHIFYEAEPDIWMVMVVEKSKES
KTSWQVDALRKVLKEVHSLFVFFHGKMRSMLERETSGGLIRSHLYPFITDYLSAYQKQSLLCNCCWDFLVGKKLQLPSFHDCLVERGTVQMLTVGREAAL
EVQSLVRVLESSAGTPSCYSLVLFQDLIVSTTLSPDDTISMFTYAVLRLTPHALLSGASSWSYLQTKNSAGSQVAVLSAISNSGSVSDNIYRPQDTLINQ
DLVKRPLHQNSWSKGKDGFLTSDIWGTGSDNRTSATPIVYLQLTEESMYLCAYQYKSLTIILLVPVSAILNGEQGVSLVKQQILENASLKVLKVEEKLSK
GWGGENAYHVSGYRYLLIDDERGVSRASPPAKVMTLTKESLLGMSKVREEVNLEKMRAQSNSSVSSDKELEICVRGKNGAWVIARTSRGKELYMVLEKAS
ETLLYASEAVEKFSNRYCGGAFSLD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G80910 Protein of unknown function (D... Lus10021811
[exp]
0 1
Lus10010597
[exp]
4.4 0.7862
AT4G04720 CPK21 calcium-dependent protein kina... Lus10020046
[exp]
12.2 0.7748
AT1G01580 FRD1, ATFRO2, F... FERRIC CHELATE REDUCTASE DEFEC... Lus10027507
[exp]
14.1 0.7612
AT2G30360 PKS5, CIPK11, S... SNF1-RELATED PROTEIN KINASE 3.... Lus10024188
[exp]
15.3 0.7614
AT1G47270 TUB AtTLP6 tubby like protein 6 (.1.2) Lus10010833
[exp]
17.0 0.7350
AT2G27090 Protein of unknown function (D... Lus10026763
[exp]
18.0 0.7620
AT2G47830 Cation efflux family protein (... Lus10000033
[exp]
20.9 0.7418
AT1G71360 Galactose-binding protein (.1) Lus10002929
[exp]
21.7 0.7538
AT1G04780 Ankyrin repeat family protein ... Lus10011743
[exp]
21.9 0.7671
AT4G29100 bHLH bHLH068 basic helix-loop-helix (bHLH) ... Lus10034940
[exp]
24.5 0.7607

Lus10021811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.