Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14750 231 / 3e-68 SDS SOLO DANCERS, Cyclin family protein (.1.2) AT4G35620 81 / 4e-16 CYCB2;2 Cyclin B2;2 (.1) AT1G20610 72 / 3e-13 CYCB2;3 Cyclin B2;3 (.1) AT1G76310 68 / 8e-12 CYCB2;4 CYCLIN B2;4 (.1) AT1G20590 60 / 4e-10 Cyclin family protein (.1) AT5G11300 59 / 4e-09 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) AT5G43080 57 / 1e-08 CYCA3;1 Cyclin A3;1 (.1) AT2G26760 56 / 5e-08 CYCB1;4, CYC3 Cyclin B1;4 (.1) AT1G15570 54 / 2e-07 CYCA2;3 CYCLIN A2;3 (.1) AT3G11520 53 / 3e-07 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034581 [exp] 929 / 0 AT1G14750 260 / 3e-79 SOLO DANCERS, Cyclin family protein (.1.2) Lus10041146 [exp] 96 / 3e-22 AT2G40410 125 / 7e-35 Staphylococcal nuclease homologue (.1.2) Lus10012261 [exp] 76 / 4e-14 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1) Lus10016015 [exp] 71 / 1e-12 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1) Lus10030746 [exp] 61 / 2e-09 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1) Lus10013226 [exp] 58 / 1e-08 AT1G76310 514 / 0.0 CYCLIN B2;4 (.1) Lus10001765 [exp] 58 / 2e-08 AT1G79500 499 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10018715 [exp] 51 / 1e-06 AT1G47230 449 / 6e-158 CYCLIN A3;4 (.1.2) Lus10024822 [exp] 50 / 5e-06 AT1G47230 452 / 5e-159 CYCLIN A3;4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G103800 [exp] 317 / 8e-101 AT1G14750 347 / 2e-112 SOLO DANCERS, Cyclin family protein (.1.2) Potri.005G100000 [exp] 73 / 2e-13 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.002G010000 [exp] 69 / 3e-12 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.009G165800 [exp] 69 / 3e-12 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1) Potri.005G251400 [exp] 63 / 2e-10 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.001G177100 [exp] 59 / 5e-09 AT1G80370 483 / 2e-168 Cyclin A2;4 (.1) Potri.003G058200 [exp] 54 / 2e-07 AT1G80370 494 / 9e-173 Cyclin A2;4 (.1) Potri.001G272000 [exp] 52 / 1e-06 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.006G035200 [exp] 52 / 1e-06 AT5G06150 408 / 7e-140 cyclin B 1;2, Cyclin family protein (.1) Potri.009G066600 [exp] 51 / 2e-06 AT2G26760 430 / 5e-150 Cyclin B1;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021812 pacid=23159356 polypeptide=Lus10021812 locus=Lus10021812.g ID=Lus10021812.BGIv1.0 annot-version=v1.0 ATGATGCAGCTCAGATCGGGCAGAAAACTCCTCCCTAAGGTGACACAACCTGTAGCAGATGCTGCTGAGCTTCCTCCGAACCTTATCTCCAAGAAGAGGA AGAAGACTCGGACGCAGCTGCCTCGCCGACTTCGATCTCGCATCTCTCCAGTTCTCTTCTCGTCCTCCAAGAAAAGAGGCCTTACGACTACCACAGGTTC CGGCTCCTGCTCTTATCAGGTCGGTGATGAGGTATCGTTTGCTACTGTTGCTGGAGATGGTGATGATGACAGTGGATTCAATCAGAGCTCGAGAACGAAA AAGCTCGGAGAGGACGACGGTGGAGAGGAGAAGAGGATTCAGCCAGCTGCTCCTGTATCCAAGAAGATTGCTACGAGCTATCACTTGATCAAGCGGAAGG AAGGTGAGATGTCGACCGTCGGAAATGGAGTCAGGGAGGTGAGCGAGTCATCCTGTGCTGCGTCGAATTATGTAGCTGAACTCGATCTATCTGTCCGGAG GACTAGGAAATTGAATAACGAGGAAGGTGAATCGAAGCTGTTCGCCGACTCGGACGGTTTAGTCGCAGTAAAAATTCCGGCGCAGATGAAAGAGAAGGAC GAAGAACGGGTGTCCGGTGCTAATTCCGAAGTTCACGAATCGTGCATGACGAATAAATCTAGTGGAGTTGGAGTCAGAGCACTGGTGTGCTCCGACTTGT CTAAACAGGAAGCTGATGCTGTCTCTGTTGATGAGTCTGTGGTGGTGAATCAGAGGCCAAACAGCTTGGCAGGGCTCGAAGACGAACTTGTTTGCTTGGA GCAATTCTCTTGTGACGAAGTCGTATCTGATTACTCCTCCAGTAACGACACGGCGTACTCGGAGCTCCAGGGTGATGTGTTCCTCGATAGCTTCTCAGAC CTCGATTTCTCGTCGGAGTACACGCCGTCGATCTTCTTGGATTCTGGAAGCCAATTCTCTCAGAAGTCCGATATCGATTCATCTCCTTCGCCTACTTATT TGTGTCTTCTCGAGTTTAGGCGTCAATTCTGCCGATCCAGTGCTCCTCTGCTCAACAGAACTTCCGCTGAAACTGAGTGCCTAGACGAGTCCAGCTATGC CAGATTCAAAGATGTAGACGATGAACAGAATTACCAGATGTTAAGAGGAAGAGAGAGAAGACACATAGTTCTACAAGACTACGTCGAGTTCTACCGCTCG ACAAAGGAGTACGGCGACCTTATATCCCAGCAACGTCGGCGGATGATCCATTGGATTATCGAGGAATCAACTGCAAAAGAGCTCCATCATGAGACAACAT TCCTGGGAGTGAACCTGCTTGACAGTGTGAGACAAAGGAATTTCCGCGTGGGAAATAATGCATACAGCAGATGCGAAATAGTTGCCATGGAATGGCTAGT ACAAGAGGTCCTCAACTTTGAATGCTTCTTCCCCACGGTCTACAAATTCTTATGGTTCTACCTAAAATCTGCTAGAGCAGACTCAGAGGTAGAGCAGAGG TCATTGAACCTTGCATTGCTTGCGGTAGCAGACTATGAGCACCTTCATTATTGGCCTTCAACTATTGCAGCATCACTTGTCATTCTGGCTTGTATGGATA CCGGCCGTACTGCCTATTCCAAGGGCGTATCTAAGCTTCATATCAGAACCAAAGAGAACGACCTTCATCCCTGTTTACAGCACACAAAAAAAGAGAGGAA ACCTCAGTTTACCATGTATAGTCTAAGACAGAGCGGGGACAAACATGCTGAAGGAAATTATAGTAGAAACTAG
AA sequence Show only first row Show all	>Lus10021812 pacid=23159356 polypeptide=Lus10021812 locus=Lus10021812.g ID=Lus10021812.BGIv1.0 annot-version=v1.0 MMQLRSGRKLLPKVTQPVADAAELPPNLISKKRKKTRTQLPRRLRSRISPVLFSSSKKRGLTTTTGSGSCSYQVGDEVSFATVAGDGDDDSGFNQSSRTK KLGEDDGGEEKRIQPAAPVSKKIATSYHLIKRKEGEMSTVGNGVREVSESSCAASNYVAELDLSVRRTRKLNNEEGESKLFADSDGLVAVKIPAQMKEKD EERVSGANSEVHESCMTNKSSGVGVRALVCSDLSKQEADAVSVDESVVVNQRPNSLAGLEDELVCLEQFSCDEVVSDYSSSNDTAYSELQGDVFLDSFSD LDFSSEYTPSIFLDSGSQFSQKSDIDSSPSPTYLCLLEFRRQFCRSSAPLLNRTSAETECLDESSYARFKDVDDEQNYQMLRGRERRHIVLQDYVEFYRS TKEYGDLISQQRRRMIHWIIEESTAKELHHETTFLGVNLLDSVRQRNFRVGNNAYSRCEIVAMEWLVQEVLNFECFFPTVYKFLWFYLKSARADSEVEQR SLNLALLAVADYEHLHYWPSTIAASLVILACMDTGRTAYSKGVSKLHIRTKENDLHPCLQHTKKERKPQFTMYSLRQSGDKHAEGNYSRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14750		SDS	SOLO DANCERS, Cyclin family pr...		Lus10021812 [exp]	0	1
					Lus10040066 [exp]	9.8	0.8301
AT4G16195			Plant self-incompatibility pro...		Lus10008107 [exp]	17.9	0.8242
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10000101 [exp]	19.0	0.8017
					Lus10039759 [exp]	19.7	0.8190
					Lus10014101 [exp]	25.5	0.7978
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002933 [exp]	28.8	0.8134
					Lus10002418 [exp]	31.0	0.8088
					Lus10019410 [exp]	32.4	0.8123
AT3G14470			NB-ARC domain-containing disea...		Lus10008584 [exp]	35.7	0.6671
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	39.3	0.8083

Compare expression of checked genes

Lus10021812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.