Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01690 1056 / 0 ARM repeat superfamily protein (.1.2) AT1G67950 148 / 1e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G46870 142 / 2e-37 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G17720 134 / 2e-34 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G32450 117 / 5e-29 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G16840 112 / 3e-27 BPA1 binding partner of acd11 1 (.1.2.3) AT1G14340 97 / 4e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G01210 92 / 2e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G53650 47 / 6e-05 CID8 CTC-interacting domain 8 (.1.2) AT1G32790 44 / 0.0005 CID11 CTC-interacting domain 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034578 [exp] 1328 / 0 AT2G01690 1164 / 0.0 ARM repeat superfamily protein (.1.2) Lus10001587 [exp] 1145 / 0 AT2G01690 1096 / 0.0 ARM repeat superfamily protein (.1.2) Lus10003702 [exp] 1127 / 0 AT2G01690 1093 / 0.0 ARM repeat superfamily protein (.1.2) Lus10003679 [exp] 466 / 1e-151 AT2G01690 614 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034580 [exp] 397 / 1e-130 AT1G67950 177 / 4e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10040095 [exp] 133 / 6e-34 AT4G17720 379 / 8e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030952 [exp] 129 / 2e-32 AT4G17720 382 / 7e-134 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011063 [exp] 120 / 1e-29 AT4G17720 333 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030491 [exp] 110 / 7e-27 AT1G14340 300 / 1e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G134600 [exp] 1159 / 0 AT2G01690 1070 / 0.0 ARM repeat superfamily protein (.1.2) Potri.010G106700 [exp] 1138 / 0 AT2G01690 1076 / 0.0 ARM repeat superfamily protein (.1.2) Potri.010G103600 [exp] 187 / 9e-53 AT1G67950 280 / 6e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.001G138400 [exp] 142 / 2e-37 AT4G17720 365 / 2e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G095400 [exp] 136 / 2e-35 AT4G17720 355 / 9e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081500 [exp] 115 / 7e-29 AT1G14340 239 / 6e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081400 [exp] 115 / 2e-28 AT1G14340 229 / 3e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.019G037600 [exp] 114 / 8e-28 AT5G32450 400 / 2e-142 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.013G055100 [exp] 112 / 4e-27 AT5G32450 389 / 9e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G070200 [exp] 53 / 2e-07 AT5G32450 65 / 8e-13 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [flax] [poplar] PF11916 [flax] [poplar] Vac14_Fig4_bd Vacuolar protein 14 C-terminal Fig4p binding CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10021813 pacid=23159313 polypeptide=Lus10021813 locus=Lus10021813.g ID=Lus10021813.BGIv1.0 annot-version=v1.0 ATGGCCGACGCGCTTTCTGTAATTCCGGCCAACGTTCTCCGCAATTTGTCGGATAAGCTCTATGAGAAGCGCAAGAATGCTGCTCTCGAGGTTGAGGGGA TAGTGAAGCAGCTAGCCGCCGCAGGCGATCATGATAAGATATCGTCTGTTATCCAGCTGTTGACGCAGGAGTACACATACTCTCCGCAAGCTAACCACCG CAAGGGAGGGTTGATAGGTTTGGCTGCTGCAACTGTAGGCTTGACATCAGAAGCAGCTCAGCATCTTGAGCAAATTGTGCCTCCTGTGCTTCATTCATTC TCTGACCAAGATAGTAGAGTCCGCTATTATGCGTGCGAAGCTTTATATAACATTGCAAAGGTTGTGAGAGGGGATTTCATTGTTTTTTTTAATCAAATAT TTGATGCTCTCTGCAAGCTTTCTGCAGATTCAGATGCCAACGTACAAAGTGCTGCCCATCTGTTAGATCGTCTTGTGAAAGACATTGTCACAGAAAGTGA TCAATTCAGCATTGAAGAATTTATCCCACTGTTGAGGGAACGTATGAATGTGCTGAATCCCTATGTCCGCCAATTTTTGGTAGGATGGATTACAGTTTTG GATAGCGTTCCGGATATCGATATGCTGGGATTTCTTCCCGATTTTCTCGATGGTTTGTTCAATATGTTGAGCGATTCTAGCCATGAAATACGTCAACAAG CTGATTCTGCACTTTCAGAGTTTCTCCAAGAAATCAAGAATTCACCAATAAATGTTCTTTTTATTCATAATTTCCTGACTCGAGCAGTGCTACTGTTGAA GTCTGTAGATTATGGTCGAATGGCTGAGATATTAGTGCAGAGGGCGGCTTCATCTGACGAATTTACTCGACTGACAGCTATCACATGGATAAATGAATTT GTGAAACTTGGCGGGGACCAACTTGTGCCTTATTATGCTGATATTCTTGGAGCGATTTTGCCTTGTATTTCCGACAAAGAAGAAAAGATTAGAGCGGTTG CTCGTGAAACCAATGAAGAGCTCCGTGCTATCAATGCTGTTCCAGCAGCAGGGTTCGATGTTGGAGCAATCCTCTCTATTGCAAGGAGGTCTGTGATCTT GCAACTGTCTAGTGAGTGGGAGGGTACAAGGATTGAGGCGTTGCACTGGATATCTGCTCTTTTAATCAGACATCGGATTGAGGTCTTAAACTTTCTGGAT GACATATTTGATACTCTCTTGAAAGCACTGTCAGATCCTTCTGATGAGGTAGTCCTGCTTGTTCTGGAGATTCATGCCTGCATTGCAAAGGATCCACAAC ATTTTCGCCAACTAGTTGTATTCTTAATGCATAACTTTCGCATTGATAATTCTCTTCTGGAAAAGCGTGGCGCTTTGATTATTAGAAGGCTCTGTGTGCT TCTGGATGCTGAAAGGGTATATAGGGAACTGTCAAAAATACTAGAGGGGGAAGCAGACTTAGATTTTGCTTCTATTATGGTTCAGGCTTTGAATCTGATT TTGCTTACGTCCTCCGAATTAGCTGAGCTTCGGGATTTGTTGAAACAGTCACTGGTCAATGCAGCAGGGAGAGATTTATTTCTGTCACTATATGCTTCAT GGAGCCATTCACCGATGGCCATCATAAGTCTTTGCTTGTTAGTGCAGCTGTGGTTCCAACTTTCTCAATTGTCCGTCTCTCAGATGTACCAGCATGCCAG TGCCGTGATACAATCACTTACAGAGGAGGATATTAATGTGAAATTCTTAGTACAGCTGGACAAACTCATTCGTCTGCTTGAGACTCCGATTTTTGCTTAC CTAAGGCTGCAGCTACTCGAGCCAGGTAGATACACATGGTTGTTGAAAGCCTTGTACGGTCTTCTGATGTTACTTCCCCAGCAAAGTGCCGCTTTTAAGA TTCTAAGGACTCGATTAAAGACTGTGCCTTCGTACTCTAATGGTGGTGATCAGTTTATTAAGCGGACATCTTCGGGAAACCCATACTCCCAAATCCTACA TCACAGTCAAAGCGGATCACAGATCTCCGAGGATGGTGATGCAGGGCAGGACATGGGGCACTCTAACTCTCAAAATGGAATAAACTTCACTTCAAAGTTG CAACAGTTTGAGCAAGTTCAGCGCCAACACCGTATCCATGCTAGAGAGCAGGCCCATTCCCGTAAAACTTTCACTTCGACTACATCAGTAAAGAGTGCCC TACTACCAGTACAAGAATACATGTACAGAGATCCAGTGAGCACCAGAATGGAGGATCCTGCTACTTTTTGGACATCCAATTGGACTATAAATGTTTCAGA TGTAAAAACAGTTCAGATCAGCAATCTTTCACCGTATGCGTCAGAGAGAAACGTCCGAGACTTCTTCGCCTACACCGGTGAAATCATTATACACGTCGAG TTGCGAAGAGAGACTGACACAACTCAGTTGGCTTATGTTACCTTCAAGGAATCACAAGGAGCAGATACCGCCTTACTTCTTTCTGGATCCACCATTGGCC AAACTCCTGTTACAATCACCCCCGTCGAGGACTACATATTGCCCCCCGAAGGATCCCGTGTGTTGGATGAAATCATGAAACCAGCGGCATCAGCCAGAAG CAACAACAACAACAACAACAACAATAACTTTGCACTTACCGTGGCGGAAGAACTGGTGAGCACCATGATAGCCAAAGGCTACGTGATGGGGAAAGACGCA CTCCACAAAGCCAAAGAATTTGACCAAGATATCCTCCACCTGTCCTCCAACGTCACCGCCATCGACGAGAGGGTGGGAATCGTCGAGAAGCTCAACCAAG GGATGGCCGCCGTCAGGAAGATGGAGCGGCAGTTCCAGGTGAAGGAGACCACCAGATCCGCCATCCTCCTCGCTCAGCCAACCCAAACAAAAAAAACCCA CCCTCTTTTAACCCCCCCCCCCCCCCCAAAAAAAAATACCAGTCCAACAAGAAAACGACAGGTTCATCGGGTAGCTGGTCGTTTCAAGTTTTGA
AA sequence Show only first row Show all	>Lus10021813 pacid=23159313 polypeptide=Lus10021813 locus=Lus10021813.g ID=Lus10021813.BGIv1.0 annot-version=v1.0 MADALSVIPANVLRNLSDKLYEKRKNAALEVEGIVKQLAAAGDHDKISSVIQLLTQEYTYSPQANHRKGGLIGLAAATVGLTSEAAQHLEQIVPPVLHSF SDQDSRVRYYACEALYNIAKVVRGDFIVFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVL DSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPINVLFIHNFLTRAVLLLKSVDYGRMAEILVQRAASSDEFTRLTAITWINEF VKLGGDQLVPYYADILGAILPCISDKEEKIRAVARETNEELRAINAVPAAGFDVGAILSIARRSVILQLSSEWEGTRIEALHWISALLIRHRIEVLNFLD DIFDTLLKALSDPSDEVVLLVLEIHACIAKDPQHFRQLVVFLMHNFRIDNSLLEKRGALIIRRLCVLLDAERVYRELSKILEGEADLDFASIMVQALNLI LLTSSELAELRDLLKQSLVNAAGRDLFLSLYASWSHSPMAIISLCLLVQLWFQLSQLSVSQMYQHASAVIQSLTEEDINVKFLVQLDKLIRLLETPIFAY LRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSYSNGGDQFIKRTSSGNPYSQILHHSQSGSQISEDGDAGQDMGHSNSQNGINFTSKL QQFEQVQRQHRIHAREQAHSRKTFTSTTSVKSALLPVQEYMYRDPVSTRMEDPATFWTSNWTINVSDVKTVQISNLSPYASERNVRDFFAYTGEIIIHVE LRRETDTTQLAYVTFKESQGADTALLLSGSTIGQTPVTITPVEDYILPPEGSRVLDEIMKPAASARSNNNNNNNNNFALTVAEELVSTMIAKGYVMGKDA LHKAKEFDQDILHLSSNVTAIDERVGIVEKLNQGMAAVRKMERQFQVKETTRSAILLAQPTQTKKTHPLLTPPPPPKKNTSPTRKRQVHRVAGRFKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01690			ARM repeat superfamily protein...		Lus10021813 [exp]	0	1
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10027482 [exp]	3.6	0.8994
AT2G01690			ARM repeat superfamily protein...		Lus10001587 [exp]	6.2	0.8540
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10021253 [exp]	7.6	0.8977
AT5G59960			unknown protein		Lus10004947 [exp]	8.8	0.8930
AT1G48790		AMSH1	associated molecule with the S...		Lus10009634 [exp]	12.8	0.8915
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10024558 [exp]	14.5	0.8859
AT3G02750			Protein phosphatase 2C family ...		Lus10021486 [exp]	16.5	0.8736
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10007311 [exp]	20.5	0.8638
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10017353 [exp]	23.4	0.8389
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	24.4	0.8745

Compare expression of checked genes

Lus10021813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.