Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01680 744 / 0 Ankyrin repeat family protein (.1) AT3G12360 361 / 4e-118 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT1G07710 357 / 6e-117 Ankyrin repeat family protein (.1) AT2G31820 357 / 1e-115 Ankyrin repeat family protein (.1) AT3G09550 355 / 1e-115 Ankyrin repeat family protein (.1) AT5G60070 343 / 6e-112 ankyrin repeat family protein (.1) AT1G05640 335 / 2e-107 Ankyrin repeat family protein (.1) AT5G02620 330 / 4e-107 ATANK1, ANK1 ankyrin-like1 (.1) AT5G54710 144 / 1e-36 Ankyrin repeat family protein (.1) AT1G34050 140 / 2e-35 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034579 [exp] 1045 / 0 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 381 / 6e-126 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015224 [exp] 375 / 8e-124 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 373 / 2e-123 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10015037 [exp] 368 / 2e-120 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 362 / 6e-118 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10023460 [exp] 357 / 4e-117 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10003986 [exp] 348 / 1e-112 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10040335 [exp] 315 / 1e-100 AT3G12360 868 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G106800 [exp] 851 / 0 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 846 / 0 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 373 / 9e-123 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.006G214500 [exp] 372 / 4e-122 AT3G12360 742 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 370 / 5e-122 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 369 / 2e-121 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 366 / 9e-120 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 360 / 5e-117 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 354 / 4e-116 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 353 / 1e-115 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021814 pacid=23159291 polypeptide=Lus10021814 locus=Lus10021814.g ID=Lus10021814.BGIv1.0 annot-version=v1.0 ATGGAGTCCAAGTCACTCCGATTCTTAGCTCACCAGTCCTTCTTCTCCGCTGTACGCTCAGCCGATCTTCACACTCTCCAGCAGATTATCGACAAGCTTC ACAAGGATCACCACTCCTCCTCTTCCTCCTCCTCTGCTGGTTCTTCTTCTTCATCATCTTCGGCGTCGCCGGTGACTGATCTGATGGCGCTGCAGAACGA CGCCGGAGAAACGGCCTTGTACATAGCTGCTGACAACAACTTGGGAGAGGTTTTCGCTTTCTTGATTAGGTTGTGTGATGTCGAAGCTCTCAAGATCAGG TCCAAGTCTGGCATCGATGTCTTCCATCTCGCTGCTAAGAAGGGCCACTTAGGTATTGTGAAGGAGATATTGGGAAGATGGCCTGAGCTCTGCAAGATAT GTGATTCGTCGAATACCAGCCCGCTTTACTCAGCAGCGGTTCAAGATCATTTGGAAGTGGTAAATGCCATCTTGGACGTTGACCTGAGCACCATTAGGAT AGTGAGGAAAAACGGCAAGACTGCGTTGCACAATGCTGCCAGATATGGCCTTCTCCGAGTGGCTAAGTTGCTTATGGAACGGGATCCCGGGATTGTGGCT ATCAAAGATAAGAAAGGTCAGACTGCACTTCATATGGCTGTTAAGGGTCAGTCTACTTCTGTTGTGGAGGAGCTTCTCCAGACTGATATCTCTGTACTCA ATGAGCGTGACAAGAAGGGTAATACTGCCATTCATATCGCTACCAGGAAATCCCGTCCCCAGATAGTAAACGTGTTAGTAAGCTACACTTCTATGGACGT CAATGCAATCAACAACCAGCGCGAGACTGCGATGGATTTAGCAGACAAGCTCCCATATGGTGAAGCAGGCTTGGAAATCCAAGAAGCACTTAGAGAAGTC GGTGCCAAGCATGCAAAGTATGTCGGAAAAGCCGATGAAGCAATGGAACTCAAGAGAACCGTGAGCGACATCAAGCACGAAGTCCACTCACAGCTCATCC AAAACGAGAAAACAAACAGGCGAGTCTCCGGTATAGCCAAAGAACTGAGGAAACTCCACCGGGAGGCAGTCCAGAATACAACCAACTCTGTAACAGTCGT AGCAGTCCTATTCGCTTCAATAGCCTTCCTAGCCATCTTCAGCTTACCCGGCCAGTACATCACGGGAGGACCAGAAGTCGGGAAGGCTAACGTAGCCGAT AACATTGGGTTCCAAGTTTTCTGCCTCTTGAACGCGACATCCCTCTTCATATCTCTGGCTGTGGTGGTTGTCCAGATCACGTTGGTTGCTTGGGACACCA CGGCTCAGAAACAGGTAGTTTCCGTGGTCAACAAGCTAATGTGGGCGGCTTGTGCTTGCACTTGCGGGGCATTTCTTGCTGTAGCGTTTGTGGTTGTTGG GAGAGGGAATTCGTGGATGGCCATCACCATAACCTTGTTGGGAGCACCGATCCTGGTCGGGACATTGGCTTTCATGGGATACTTTGTTTTCAGGCAACAT TGCGGGTCGTTCAAGGACTCGCAGAGGCGGATCAAACGAGCGAGTGGGAGCAAGTCGTTCTCGTGGTCAGTGTACTCGGCCAATATGTCGGATATCGATG ATTACGACTCTGATATGGAGAAGATATATGCTTTGTGA
AA sequence Show only first row Show all	>Lus10021814 pacid=23159291 polypeptide=Lus10021814 locus=Lus10021814.g ID=Lus10021814.BGIv1.0 annot-version=v1.0 MESKSLRFLAHQSFFSAVRSADLHTLQQIIDKLHKDHHSSSSSSSAGSSSSSSSASPVTDLMALQNDAGETALYIAADNNLGEVFAFLIRLCDVEALKIR SKSGIDVFHLAAKKGHLGIVKEILGRWPELCKICDSSNTSPLYSAAVQDHLEVVNAILDVDLSTIRIVRKNGKTALHNAARYGLLRVAKLLMERDPGIVA IKDKKGQTALHMAVKGQSTSVVEELLQTDISVLNERDKKGNTAIHIATRKSRPQIVNVLVSYTSMDVNAINNQRETAMDLADKLPYGEAGLEIQEALREV GAKHAKYVGKADEAMELKRTVSDIKHEVHSQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSVTVVAVLFASIAFLAIFSLPGQYITGGPEVGKANVAD NIGFQVFCLLNATSLFISLAVVVVQITLVAWDTTAQKQVVSVVNKLMWAACACTCGAFLAVAFVVVGRGNSWMAITITLLGAPILVGTLAFMGYFVFRQH CGSFKDSQRRIKRASGSKSFSWSVYSANMSDIDDYDSDMEKIYAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01680			Ankyrin repeat family protein ...		Lus10021814 [exp]	0	1
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10028866 [exp]	4.2	0.8863
					Lus10033310 [exp]	6.2	0.8719
AT1G01360		PYL9, RCAR1	PYRABACTIN RESISTANCE 1-LIKE 9...		Lus10040916 [exp]	6.5	0.8671
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10033697 [exp]	9.2	0.8669
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10040925 [exp]	14.1	0.8490
AT3G61180			RING/U-box superfamily protein...		Lus10036569 [exp]	16.0	0.7953
AT3G04350			Plant protein of unknown funct...		Lus10027952 [exp]	17.2	0.8639
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10009819 [exp]	18.4	0.8388
AT4G22240			Plastid-lipid associated prote...		Lus10014790 [exp]	20.8	0.8389
					Lus10034772 [exp]	22.1	0.8495

Compare expression of checked genes

Lus10021814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.