Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021684 [exp] 599 / 0 ND / Lus10038678 [exp] 553 / 0 ND / Lus10021528 [exp] 547 / 0 ND / Lus10033874 [exp] 518 / 0 ND / Lus10024215 [exp] 513 / 0 ND / Lus10010826 [exp] 513 / 0 ND / Lus10002071 [exp] 508 / 0 ND / Lus10015042 [exp] 505 / 0 ND / Lus10010604 [exp] 502 / 0 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021816 pacid=23159295 polypeptide=Lus10021816 locus=Lus10021816.g ID=Lus10021816.BGIv1.0 annot-version=v1.0 ATGCGTAGTTGTGAACATCAGGCTTTTTATCTTGAATCCTTCATTGAGCGTCCTATTCTTCCATCTGTTCATGTCGATCCAGCTTTCTTTGATCGTTATG GTCTTAATCCCTCTGCTCTTATTGGAAACCTTGGATGGGGGTCTCTTGCCCTCCATCAACGTCATCAGTACTTCCCTGATGCAGTTCGACAATTCTATGT TAACCTGCAGCTGGAAGGCTCTCTACAGGACGGGCGATTCAGTACCATCGTTGCAGGATATCGCATTGTAATCACTCCTCGACTTCTCTCAACCGTTCTT GGAATTCCTTCTGGGGGTGCTTCAATTTTTCATGACTCTGATCTCTGTAAAATTCCCTTTGATGCCTCTGTTGTCCTTGCTCGATGGACCAATGCTCCTC CTACAGCTCGACCTCTCTCCATCATCTCCATGCTGCCCGACTATTTGAAAGTCCTTCATTTCTTTATTACCAGGGTCTTTCTTCCTCGATCAGCTGGGAA ATTTCTAGTTACGAGTCTGGACACTTGGATTATGCACTGGGCCATCTTCAATTTTCAAACAGATTACAGCTGCCTAATGTTTGCTTCTATGGTTTCTTAT GGGAATCGTACCTTTCCTGGAGATCTTCCTTTTGGGCCTGACATCTCCTATCTTTTCTATGCCCTCAGTGTCCTTATTCATGGTGTTTTTTTCCTTGAGG CTCCTCTGCACAACCTTCGTCCGAGTCACGTGCTTCGTGAAGTTGGTTGGGATCATCTTCAACCTTCCTCTGGCTCAGGGGGAGAACCTCTTCATGACCT CAACTTTTCAGATGATGAAGTAGATGACCTTGCGGATGAGATTGAACGAAACTTGGAAATTCAGGAAGGCCTTGATGCAGCTGGTGTTGATGATCTTTCT CTGTCTAGTCATTCTCCGAACAGTGGCATGTAG
AA sequence Show only first row Show all	>Lus10021816 pacid=23159295 polypeptide=Lus10021816 locus=Lus10021816.g ID=Lus10021816.BGIv1.0 annot-version=v1.0 MRSCEHQAFYLESFIERPILPSVHVDPAFFDRYGLNPSALIGNLGWGSLALHQRHQYFPDAVRQFYVNLQLEGSLQDGRFSTIVAGYRIVITPRLLSTVL GIPSGGASIFHDSDLCKIPFDASVVLARWTNAPPTARPLSIISMLPDYLKVLHFFITRVFLPRSAGKFLVTSLDTWIMHWAIFNFQTDYSCLMFASMVSY GNRTFPGDLPFGPDISYLFYALSVLIHGVFFLEAPLHNLRPSHVLREVGWDHLQPSSGSGGEPLHDLNFSDDEVDDLADEIERNLEIQEGLDAAGVDDLS LSSHSPNSGM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021816 [exp]	0	1
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10019242 [exp]	7.0	0.8975
AT3G22640		PAP85	cupin family protein (.1)		Lus10022070 [exp]	7.4	0.8073
AT3G50845			Protein of unknown function (D...		Lus10014311 [exp]	8.9	0.8943
AT1G06645			2-oxoglutarate (2OG) and Fe(II...		Lus10033876 [exp]	11.5	0.8448
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10009924 [exp]	11.7	0.8439
AT5G17680			disease resistance protein (TI...		Lus10028043 [exp]	12.3	0.8310
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10015066 [exp]	12.4	0.8935
AT3G05610			Plant invertase/pectin methyle...		Lus10015211 [exp]	14.4	0.8920
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10039011 [exp]	15.7	0.7592
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	16.1	0.8915

Compare expression of checked genes

Lus10021816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.