Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14820 162 / 9e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G01630 72 / 4e-15 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G08690 49 / 5e-07 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 43 / 8e-05 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21520 42 / 0.0002 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G18180 42 / 0.0002 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G55690 42 / 0.0002 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G75370 42 / 0.0003 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 41 / 0.0003 ATSFH12 SEC14-like 12 (.1) AT1G19650 41 / 0.0003 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001584 [exp] 212 / 5e-69 AT1G14820 320 / 2e-111 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10003699 [exp] 207 / 2e-67 AT1G14820 316 / 1e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10034577 [exp] 176 / 1e-55 AT1G14820 257 / 3e-87 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10004684 [exp] 87 / 2e-20 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040252 [exp] 84 / 2e-19 AT1G01630 319 / 8e-111 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10022428 [exp] 79 / 9e-18 AT1G01630 323 / 1e-112 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10016733 [exp] 78 / 3e-17 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10022533 [exp] 44 / 5e-05 AT1G55840 365 / 8e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10032587 [exp] 43 / 7e-05 AT1G55840 407 / 2e-143 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G135600 [exp] 187 / 1e-59 AT1G14820 323 / 2e-112 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.010G105400 [exp] 177 / 1e-55 AT1G14820 326 / 1e-113 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.015G023000 [exp] 148 / 3e-44 AT1G14820 276 / 5e-94 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.017G063966 [exp] 80 / 8e-18 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G068000 [exp] 73 / 2e-15 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.003G162100 [exp] 73 / 2e-15 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.010G105100 [exp] 66 / 6e-14 AT1G14820 113 / 3e-32 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G261000 [exp] 46 / 8e-06 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025800 [exp] 46 / 8e-06 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.013G068700 [exp] 46 / 1e-05 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10021817 pacid=23159299 polypeptide=Lus10021817 locus=Lus10021817.g ID=Lus10021817.BGIv1.0 annot-version=v1.0 ATGGAGAACTCAAGCAAAATGGCACTTACCCAGATGAGGAAATCGGTCGAGAAGCTCAATTCCACCGCTGAAAAACATGGAGACTCAACATTGAACAGGT TCCTGATCGCGAGGTCGATGAACAGCTACAAGGCTGCTGAGATGTTCGTGCAGTGGCAGAAATGGAGGGAGTTCATAGTTCATCTGTTGGATAAAACTAT TGCCAGTTGTGAACATTCATCTCATTTGTCCCTTGTTCAGCTCATCAATGGAAGAGAAAGGGGAAATGAGAAGCTGGTGGCCATCTTGGATCTGCACCAA CTTGCATACAAGAACGTCGATGCTCTTGGCTTGATCACCGGTTTCCAGTTTTTGCAGGCTTACTACCCAGAGCGATTGCACAAGTTGTACATATTAAACA TGCCACAATTCTTTGTGAGCATGTGGAGGATCGTGTCACGCTTCCTTGAGAAGGCAACGCTAGAGAAGCTTGGGTTGGGCTTCTGTCAGTGGGCTGTTCA TGGGCCGAAACTTGAGCCTTATCACTCAGACTTGGTTTACGTCAACAAGCTCCCCCTAAGCCTGATGATGGCTCACTCCTTGCACAAAGATTCATTATAT GATCTTTATGATATTGATTTTGGGATCCTGCAGAAACCAGTCTTTGTATATGCCATTAAGTGA
AA sequence Show only first row Show all	>Lus10021817 pacid=23159299 polypeptide=Lus10021817 locus=Lus10021817.g ID=Lus10021817.BGIv1.0 annot-version=v1.0 MENSSKMALTQMRKSVEKLNSTAEKHGDSTLNRFLIARSMNSYKAAEMFVQWQKWREFIVHLLDKTIASCEHSSHLSLVQLINGRERGNEKLVAILDLHQ LAYKNVDALGLITGFQFLQAYYPERLHKLYILNMPQFFVSMWRIVSRFLEKATLEKLGLGFCQWAVHGPKLEPYHSDLVYVNKLPLSLMMAHSLHKDSLY DLYDIDFGILQKPVFVYAIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10021817 [exp]	0	1
AT3G53210			nodulin MtN21 /EamA-like trans...		Lus10028351 [exp]	14.5	0.8632
AT1G72175			RING/U-box protein with domain...		Lus10020349 [exp]	22.8	0.8607
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016494 [exp]	26.4	0.8460
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10030274 [exp]	34.6	0.8409
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10001012 [exp]	41.5	0.8382
AT1G09050			unknown protein		Lus10037506 [exp]	45.9	0.8324
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10023612 [exp]	50.3	0.8284
AT5G06440			unknown protein		Lus10029361 [exp]	52.8	0.7998
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10016312 [exp]	57.2	0.7854
AT1G79160			unknown protein		Lus10031755 [exp]	59.5	0.8175

Compare expression of checked genes

Lus10021817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.