Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20540 499 / 3e-178 Transducin/WD40 repeat-like superfamily protein (.1) AT1G76260 465 / 2e-164 DWA2 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2 (.1) AT1G79990 65 / 5e-11 structural molecules (.1.2.3.4.5) AT3G15980 64 / 9e-11 Coatomer, beta' subunit (.1.2.3.4.5) AT1G52360 64 / 1e-10 Coatomer, beta' subunit (.1.2) AT1G29260 62 / 1e-10 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT2G16780 57 / 9e-09 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT4G35050 57 / 1e-08 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT4G29730 56 / 2e-08 MSI5, NFC5 nucleosome/chromatin assembly factor group C5 (.1) AT2G19540 51 / 9e-07 Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034576 [exp] 599 / 0 AT1G20540 522 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 65 / 4e-11 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 64 / 6e-11 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10026094 [exp] 61 / 3e-10 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10029221 [exp] 62 / 4e-10 AT1G29260 531 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10007274 [exp] 61 / 4e-10 AT1G29260 529 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Lus10011467 [exp] 60 / 2e-09 AT1G52360 1505 / 0.0 Coatomer, beta' subunit (.1.2) Lus10037525 [exp] 54 / 1e-07 AT1G52360 513 / 3e-176 Coatomer, beta' subunit (.1.2) Lus10039578 [exp] 50 / 4e-06 AT3G63460 1380 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G249800 [exp] 516 / 0 AT1G20540 616 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G011200 [exp] 494 / 3e-176 AT1G20540 578 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G057600 [exp] 66 / 7e-12 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.001G179200 [exp] 62 / 3e-10 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.003G056300 [exp] 61 / 8e-10 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.009G135100 [exp] 56 / 3e-08 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 55 / 4e-08 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.011G066600 [exp] 54 / 4e-08 AT1G29260 379 / 3e-134 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.018G068200 [exp] 54 / 1e-07 AT2G19520 812 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.003G038800 [exp] 49 / 6e-06 AT2G19520 720 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10021818 pacid=23159354 polypeptide=Lus10021818 locus=Lus10021818.g ID=Lus10021818.BGIv1.0 annot-version=v1.0 ATGCAAGGAGGATCTTCAGGAGTCGGCTATGGGCTCAAGTATCAGATTGAACTCGCAATTCGCCTTCAACAATGTGCAGGCCAGGTGCATATCGGACGTA AAAGCGGATACGGATCACACTACCTTCCTCACCGGCACTCTCAGCCTCAGAGAAGAAAACGAGGTTTCTTCATCTTTCCTTGTCCAGCTCTCGTTCGCCT TGCTGATCTCGTTTCCCCGGTTCACTTGATTAGATTATCGGCCGACGGAACTGAGCTCATTTGCGACGGCTTGTTCTCTCATCCTAATGAGATCTGGGAC CTTCGATCGTGTCCATTTGATCAGCGCATTTTCTCAACTGTCTATTCCAATGGCGAGTCATATGGAGCGGCAGTTTGGCAGATCCCTGAGCTATATGGCC AGCTGAATTCTCCTCAATTGGAAAAAGTTGCGTTCCTTGATGAGCATGCCAGGAAGATTAAGTGTGTTCTTTGGTGGCCATCTGGAAGAAGTGACAAGTT GGTCAGCATTGATGAGGAAAACCTGTTGTTGTGGAGCTTAGACTCCTCAAGGAAAACAGCTCAGGTGCAATCTAAGGAGTCAGCTGGTACATTGCACTAC TTATCTGGAGGAGCATGGGATCCGCATGATGTGAACTCTCTTGCAGCAACTTGTGAATCTTCAGTCCAGTTTTGGGATCTGCGAACAATGACGAAGACGA ATTCTATTGATGTCTCCCATGTCCGAACTACTGATTATGACCCAAAGAAGAATCATATACTTGTTACTGCAGAGGATGAAACTGGGATTCACGTATGGGA TCTTAGGATGACAAAGGTTCCTATCCAAGAGTTTCCAGGACACACTCACTGGACTTGGGCCATAACTTGCAACCCTGAGTATGATGGCATCGTTCTGAGT GGTGGCACTGACTCTGCTGTTAACTTATGGTTGGCTTCAACAGAATCTAGTGCTGAGCTAACGTCGCAAAGTGTGGATTACTCGTCGACTCCAAAGGTTG ATCCATTAGTTAACTCCTATACTGACTATGAAGACAGTGTATATGGGCTTGCCTGGAGTTCTCGTGAACCCTGGATATTTGCATCTCTATCATACGATGG AAGGGTAATGATATTCATATTTTTCCTACCCTTTACGATTTGGTATGTGAGTATGAGTAAAACTTTGAGATGTCGGCACTAG
AA sequence Show only first row Show all	>Lus10021818 pacid=23159354 polypeptide=Lus10021818 locus=Lus10021818.g ID=Lus10021818.BGIv1.0 annot-version=v1.0 MQGGSSGVGYGLKYQIELAIRLQQCAGQVHIGRKSGYGSHYLPHRHSQPQRRKRGFFIFPCPALVRLADLVSPVHLIRLSADGTELICDGLFSHPNEIWD LRSCPFDQRIFSTVYSNGESYGAAVWQIPELYGQLNSPQLEKVAFLDEHARKIKCVLWWPSGRSDKLVSIDEENLLLWSLDSSRKTAQVQSKESAGTLHY LSGGAWDPHDVNSLAATCESSVQFWDLRTMTKTNSIDVSHVRTTDYDPKKNHILVTAEDETGIHVWDLRMTKVPIQEFPGHTHWTWAITCNPEYDGIVLS GGTDSAVNLWLASTESSAELTSQSVDYSSTPKVDPLVNSYTDYEDSVYGLAWSSREPWIFASLSYDGRVMIFIFFLPFTIWYVSMSKTLRCRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20540			Transducin/WD40 repeat-like su...		Lus10021818 [exp]	0	1
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Lus10040815 [exp]	4.2	0.7759
AT5G58030			Transport protein particle (TR...		Lus10003634 [exp]	11.1	0.7534
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000716 [exp]	12.5	0.7417
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Lus10033837 [exp]	15.3	0.7203
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10041291 [exp]	18.2	0.7312
AT2G41150			unknown protein		Lus10018111 [exp]	19.6	0.7004
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039547 [exp]	20.0	0.6621
AT3G48820			Glycosyltransferase family 29 ...		Lus10032547 [exp]	20.8	0.7567
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	21.5	0.6795
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10038698 [exp]	23.0	0.6787

Compare expression of checked genes

Lus10021818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.