Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42430 593 / 0 unknown protein AT3G55760 199 / 6e-58 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034575 [exp] 793 / 0 AT1G42430 598 / 0.0 unknown protein Lus10021897 [exp] 189 / 2e-53 AT3G55760 538 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G249700 [exp] 606 / 0 AT1G42430 609 / 0.0 unknown protein Potri.002G011300 [exp] 593 / 0 AT1G42430 589 / 0.0 unknown protein Potri.008G159500 [exp] 195 / 3e-56 AT3G55760 561 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021819 pacid=23159345 polypeptide=Lus10021819 locus=Lus10021819.g ID=Lus10021819.BGIv1.0 annot-version=v1.0 ATGACGGCCGCCACTTCCAGAAGTTTTCCCACTCACACACACCTCCATTTCGACCTCCGACCAGCAACTCGCTGCCCGCCCACTACCATCTCTTGTTCTT GCTCCGACTCCGTTGTTCCGATTCGCAGAACTGCCGCCTCCTCCTGCAACCGCGTGGAGAAAGTTTCCCACAAGCTTCCTCGCCGGCACCGAATCCGAGC TTGCCCCGCATTGCCCTTCGCTTCTTCACAGTATGGTCCCGGCTCTGCTGTTTCTGTTGAATTTTCCTTTTCCAGTTCGTCTCGAATATTCCTCAACAAG CAAGGGAAGTTCTACCGGCGTTGTACTCCTAGGAATTCCGGCCCGCAATCTCGAGATACTCCGCCCAAGAGAGATACTGGGATTGCGAATGAGAAAGACT GGGGGATCGACCTGGTAAATGAGATTGTTAATGAATCTGGCACTAACGAAGATGGCAGCACTTGGTACCGGGAAGGTGGAGAAGACTTGGGAGAAAAGGG CTACAGATGTAAATGGACGACCATGGGAGGCAAATCACATGATGGTTCTTCACAGTGGAAAGAGACGTGGTGGGAGAAAAGTGACTGGACTGGATACAAG GAGTTGGGTGTAGAGAAATCAGGGAAGAATGCAGAAGGGGATTCTTGGTGGGAAACTTGGCAAGAGGTGCTTCACCAAGATGAGTGGAGTAATCTGGCAA GGATAGAGAGGAGTGCTCAGAAGCAAGCGAAATCAGGCACTGGGGAGGCTGGATGGTTTGAGAAATGGTGGGAGAAATACGATGCTAAGGGGTGGACTGA GAAAGGAGCTCACAAATATGGTAGGCTGAATGAGCAATCCTGGTGGGAAAAGTGGGGAGAACATTATGATGGAAGAGGATCTGTTCTCAAATGGACAGAT AAATGGGCTGAGACGGAACTGGGAACCAGGTGGGGAGACAAGTGGGAGGAGAAGTTCTTTGCTGGTATTGGCGCACGGCATGGAGAAACTTGGCATGTTT CTCCAAACGACGAACGTTGGACAAGGACATGGGGTGAAGAGCACTTAGGCAATGGCAAAGTTCACAAGTATGGGAAAAGCACAACGGGTGAATCCTGGGA TATTGTAGTGGATGAGGAAACCTATTACGAGGCTGAGCCACACTATGGATGGGCGGATGTAGTGGGAGATTCGAGCCAGCTACTGTCAATACAACCTCGA GAGCGGCCACCTGGAGTCTTTCCAGACCTCAATTTCGGACCACCTTCTGATGAAAACATTCCTCCGACGACGCAATGA
AA sequence Show only first row Show all	>Lus10021819 pacid=23159345 polypeptide=Lus10021819 locus=Lus10021819.g ID=Lus10021819.BGIv1.0 annot-version=v1.0 MTAATSRSFPTHTHLHFDLRPATRCPPTTISCSCSDSVVPIRRTAASSCNRVEKVSHKLPRRHRIRACPALPFASSQYGPGSAVSVEFSFSSSSRIFLNK QGKFYRRCTPRNSGPQSRDTPPKRDTGIANEKDWGIDLVNEIVNESGTNEDGSTWYREGGEDLGEKGYRCKWTTMGGKSHDGSSQWKETWWEKSDWTGYK ELGVEKSGKNAEGDSWWETWQEVLHQDEWSNLARIERSAQKQAKSGTGEAGWFEKWWEKYDAKGWTEKGAHKYGRLNEQSWWEKWGEHYDGRGSVLKWTD KWAETELGTRWGDKWEEKFFAGIGARHGETWHVSPNDERWTRTWGEEHLGNGKVHKYGKSTTGESWDIVVDEETYYEAEPHYGWADVVGDSSQLLSIQPR ERPPGVFPDLNFGPPSDENIPPTTQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G42430			unknown protein		Lus10021819 [exp]	0	1
AT1G42430			unknown protein		Lus10034575 [exp]	1.0	0.9019
AT1G48620		HON5	high mobility group A5 (.1)		Lus10032231 [exp]	5.3	0.7939
					Lus10003404 [exp]	10.1	0.6621
AT4G02100			Heat shock protein DnaJ with t...		Lus10002438 [exp]	11.7	0.7638
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10007882 [exp]	13.7	0.7502
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10022653 [exp]	15.7	0.7362
AT1G44130			Eukaryotic aspartyl protease f...		Lus10018148 [exp]	16.2	0.7829
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034075 [exp]	18.2	0.7541
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001625 [exp]	20.5	0.7746
					Lus10007178 [exp]	21.4	0.7354

Compare expression of checked genes

Lus10021819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.