Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76180 61 / 2e-11 ERD14 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2) AT1G20450 56 / 4e-09 LTI45, ERD10, LTI29 LOW TEMPERATURE INDUCED 45, LOW TEMPERATURE INDUCED 29, EARLY RESPONSIVE TO DEHYDRATION 10, Dehydrin family protein (.1.2) AT1G20440 47 / 3e-06 AtCOR47, RD17, COR47 cold-regulated 47 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034568 [exp] 198 / 6e-64 AT1G20450 102 / 5e-27 LOW TEMPERATURE INDUCED 45, LOW TEMPERATURE INDUCED 29, EARLY RESPONSIVE TO DEHYDRATION 10, Dehydrin family protein (.1.2) Lus10005652 [exp] 59 / 2e-10 AT1G20450 81 / 1e-18 LOW TEMPERATURE INDUCED 45, LOW TEMPERATURE INDUCED 29, EARLY RESPONSIVE TO DEHYDRATION 10, Dehydrin family protein (.1.2) Lus10021240 [exp] 53 / 3e-08 AT1G76180 81 / 6e-19 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G248100 [exp] 57 / 1e-09 AT1G76180 49 / 4e-07 EARLY RESPONSE TO DEHYDRATION 14, Dehydrin family protein (.1.2) Potri.002G013200 [exp] 43 / 8e-05 AT1G20440 50 / 1e-06 cold-regulated 47 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00257 [flax] [poplar] Dehydrin Dehydrin
Representative CDS sequence Show only first row Show all	>Lus10021827 pacid=23159312 polypeptide=Lus10021827 locus=Lus10021827.g ID=Lus10021827.BGIv1.0 annot-version=v1.0 ATGGCTGAGGAGATGAAGAACCAGGATGATCAGGTGGCCGGAGTTGAAACTAGCGACCGCGGGATGTTTGATTTTTTGGGGAAGAAGAAGGATGATCACG AAGTAGATCAAAAGCCTTCAGAGGAAGCCATCTCTTCTCAGTTTGAGCAGAAGGTTCATGTTTCCGAACCCCCTCATTATAAGGAAGCTGAGGAGGAAGA GGAGGAAGTGAAAAAGGGCAGTCTTTTAGAGAAGCTTCACCGATCTTCCAGTAGCTCCAGCTCTTCGAGCGAAGAGGAAGTAGAGGAAGGAGGGGAGAAG AGGAAGAAGAAGAAGGACAAGAAGAAGAAGAAAGAGGAGGAGGACACGACAGTCCCCGTGGAGAAATGCGAGGAGGACGCCGTTTTGGTGCCAGAGGAGA AGAAGGGTTTCATGGATAAGATCAAGGAGAAGCTTCCAGGGCATGGGAAGAAGGAAGAAGTATCTGCTGCTGCTGCCGCTGGTCATCCGGTTCCAACTTC TCATCCACCTCATGCTACAGAGTCAGCTGCCGAGAAGCAGGCTGAAGATGCCTCCGCCGCCGCCAGTGGTGGGGAGAAGAAGGGGTTCTTGGAGAAGATT AAGGAGAAGCTGCCAGGGTATCACCCCAAAACCGCTACAACTGAGGAGGAGAAGGAGAAGGAGAAAGAGAGTCATTAA
AA sequence Show only first row Show all	>Lus10021827 pacid=23159312 polypeptide=Lus10021827 locus=Lus10021827.g ID=Lus10021827.BGIv1.0 annot-version=v1.0 MAEEMKNQDDQVAGVETSDRGMFDFLGKKKDDHEVDQKPSEEAISSQFEQKVHVSEPPHYKEAEEEEEEVKKGSLLEKLHRSSSSSSSSSEEEVEEGGEK RKKKKDKKKKKEEEDTTVPVEKCEEDAVLVPEEKKGFMDKIKEKLPGHGKKEEVSAAAAAGHPVPTSHPPHATESAAEKQAEDASAAASGGEKKGFLEKI KEKLPGYHPKTATTEEEKEKEKESH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76180		ERD14	EARLY RESPONSE TO DEHYDRATION ...		Lus10021827 [exp]	0	1
AT5G03110			unknown protein		Lus10019920 [exp]	2.0	0.9155
AT3G02700			NC domain-containing protein-r...		Lus10010962 [exp]	2.0	0.9197
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10004159 [exp]	3.0	0.9147
AT1G51630			O-fucosyltransferase family pr...		Lus10035749 [exp]	5.7	0.9114
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022748 [exp]	6.8	0.8792
AT4G33640			unknown protein		Lus10007087 [exp]	6.9	0.8997
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10027885 [exp]	7.7	0.8951
AT5G39865			Glutaredoxin family protein (....		Lus10007256 [exp]	8.7	0.8755
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10014132 [exp]	10.9	0.9024
AT1G51630			O-fucosyltransferase family pr...		Lus10037328 [exp]	11.0	0.8591

Compare expression of checked genes

Lus10021827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.