Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01680 546 / 0 SEOR1, SEOb Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein AT3G01670 470 / 2e-155 SEOa sieve element occlusion a, unknown protein AT1G67790 173 / 4e-46 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034567 [exp] 1341 / 0 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022304 [exp] 857 / 0 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000551 [exp] 796 / 0 AT3G01680 539 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022305 [exp] 751 / 0 AT3G01680 744 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10017777 [exp] 748 / 0 AT3G01680 493 / 3e-165 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10032103 [exp] 736 / 0 AT3G01680 757 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10014580 [exp] 735 / 0 AT3G01680 758 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022306 [exp] 718 / 0 AT3G01680 735 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000548 [exp] 711 / 0 AT3G01680 677 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G050300 [exp] 1147 / 0 AT3G01680 577 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050501 [exp] 1146 / 0 AT3G01680 575 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.008G183200 [exp] 1088 / 0 AT3G01680 576 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050701 [exp] 1056 / 0 AT3G01680 534 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340600 [exp] 799 / 0 AT3G01680 746 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340500 [exp] 796 / 0 AT3G01680 730 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340400 [exp] 796 / 0 AT3G01680 724 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340200 [exp] 788 / 0 AT3G01680 724 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.017G071000 [exp] 782 / 0 AT3G01680 693 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340300 [exp] 778 / 0 AT3G01680 718 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11594 [flax] [poplar] Med28 Mediator complex subunit 28
Representative CDS sequence Show only first row Show all	>Lus10021828 pacid=23159340 polypeptide=Lus10021828 locus=Lus10021828.g ID=Lus10021828.BGIv1.0 annot-version=v1.0 ATGACTCTTGTCCCTCACAAGATGAGCAGAGGTGACCGTCACATGTTTGCATCGTCGGATGACAATGCAATGATGAAGCAAATTCAGGCCACTCATGCTC CAGATGGCCGCGAATTTGCTGTCGAACCTCTGCTGCACATTGTCGAAGATGCCTTCCATAGGTCCCACCCGAGCCTTCCCCCCACCTCAGGTGAACTCGC GGGAGCTCACCAGGCACAACTGGATGCCTTGGAGGACAAAGCACTCGAAAACGGCCTCCACGAAACTCTGGAAATTCTGTCCTTCACAATTAACAAGATC TCCTGTGAGATCTCCTGCAAGTGCTCAGGAGGCGGCGATGCACATGCGACCACGATGTCCATATTCAACATTGTCTCGAGCTACTCGTGGGACGCGAAAG TGGTGCTGGCCTTGGCTGCATTTGCAGTGAACTACGGAGAATTCTGGCTCGTGGCGCAGCTATACCTCACCAACCCACTTGCCAAAGCTGTGGCACTTCT CAAACAACTCCCCGACATCCTCGAACGAGCTGAAACTTTGAAGCTGAGGTTTGATGCTCTAAGTAACCTGATCAAGGCCATGATGGATGTTGCCAAGTGT ATTGTTGAGTTCAAGGAGCTTCCATCTCAATACATCAGCCCTGACACCCCTGAGATGTTAGCTGCAACTGCTCATATACCAACAGCAGTTTACTGGACCA TTCGGAGCATCGTGGCTTGTGCCTCACAGATCATTGGCCTTATTGGCATGGGTCATGAGTACATAACTTCAACAACTGAAGCATGGGAGCTATCAAGCAT GGCTCATAAGGTCACTAACATTCATAGCCATCTCATGAAGCAGCTCACTGTCTGTTATCAACATATCGATGAGAAGAGGCACATTGAAGCATACCAAGCA CTAATCCGACTCTTCGAGATGGTCCACATCGACAACCTAAAGATCCTTCGTGCTTTGATCTACGCAAAGGATGATCAGCTCCCACTCGTGGATGGTGCCA CGAGAAAAAGAGCGAGTCTAGATGTCCTAAGGCGAAAAAACGTACTCCTCCTGATCTCGGACCTTGAACTCTCCCACGAGGAGCTCTCAATGCTCGAGCA AATGTACCACGAGGCTCGCCGGCACCCCACGAGGTCAGAGAGCCAGTACGAGGTCGTCTGGATGCCTGTGGTTGACCGGTCCACGCCATGGAACGAGGAA AAGCAAAAGGGGTTCGAGAGGCTTCAATCCATGATGCCCTGGTATTCGGTCTACCACCCTTCTTTGCTTGACCTTGCAGTCATCAGGTACATCAAGGAAG CCTGGCATTTCAACAAGAAGCCCCTCTTAGTGGTCCTTGACCCTCAAGGCAAAGTTGTGAACCCTAATGCCCTCCATATGATGTGGATTTGGGGTAGCTT GGCTTTCCCTTTCACCACTATGAGAGAGGAAGCCCTCTGGAAGGACGAATCTTGGAGGCTCGAGCTCTTGGCTGATGCCATCGATCCCATGATACCCTCA TGGATATCACAGGGGAAATTCATTTGCCTATATGGAGGAGAAGACATGGAATGGATTAGAAAGTTCACAGTGTTAGCACAAGCAGTAGCTCAGGCAGCAG GGATCAGCCTAGAGCTTCTGTACGTTGGGAAAAGCAGCCCCAGGGAGAAAGTCAGGAAGAACAATGTGATGATCCAGTCCGAAAACCTCAGCCATGTCCT TCCTGACCTCACACTCATCTGGTTCTTTTGGGTCAGGCTGGAGAGCATGTGGCACTCCAAAGTCCAGCACAACAGGACGGTCGAAAATGACGTTATAATG CAGGAGATTGTGACGATGCTGAGCTTCGATGGGAGCGAACAAGGGTGGGCAGTGGTGAGTAGGGCCTCGGCCGAGATGGCTAAGGGGAAAGGGGAGACGA TCCTGAAGAGCTTGATGGAGTATGAAGAGTGGATAGGGATTGCTGAGGAGAAAGGGTTTGTTCCTGCACTGAATGATTACCTTTTAGGGTTGCATTCTCC ATTACATTGCAACAGGTTGATTCTGCCTGGGAGTACTGGCAGTATTCCTGATAGGGTTGTCTGCGCCGAGTGTGGGCGTGCCATGGAGAAATTCATCATG TATCGTTGCTGCACTGATTGA
AA sequence Show only first row Show all	>Lus10021828 pacid=23159340 polypeptide=Lus10021828 locus=Lus10021828.g ID=Lus10021828.BGIv1.0 annot-version=v1.0 MTLVPHKMSRGDRHMFASSDDNAMMKQIQATHAPDGREFAVEPLLHIVEDAFHRSHPSLPPTSGELAGAHQAQLDALEDKALENGLHETLEILSFTINKI SCEISCKCSGGGDAHATTMSIFNIVSSYSWDAKVVLALAAFAVNYGEFWLVAQLYLTNPLAKAVALLKQLPDILERAETLKLRFDALSNLIKAMMDVAKC IVEFKELPSQYISPDTPEMLAATAHIPTAVYWTIRSIVACASQIIGLIGMGHEYITSTTEAWELSSMAHKVTNIHSHLMKQLTVCYQHIDEKRHIEAYQA LIRLFEMVHIDNLKILRALIYAKDDQLPLVDGATRKRASLDVLRRKNVLLLISDLELSHEELSMLEQMYHEARRHPTRSESQYEVVWMPVVDRSTPWNEE KQKGFERLQSMMPWYSVYHPSLLDLAVIRYIKEAWHFNKKPLLVVLDPQGKVVNPNALHMMWIWGSLAFPFTTMREEALWKDESWRLELLADAIDPMIPS WISQGKFICLYGGEDMEWIRKFTVLAQAVAQAAGISLELLYVGKSSPREKVRKNNVMIQSENLSHVLPDLTLIWFFWVRLESMWHSKVQHNRTVENDVIM QEIVTMLSFDGSEQGWAVVSRASAEMAKGKGETILKSLMEYEEWIGIAEEKGFVPALNDYLLGLHSPLHCNRLILPGSTGSIPDRVVCAECGRAMEKFIM YRCCTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10021828 [exp]	0	1
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10010848 [exp]	1.4	0.8563
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	2.0	0.8576
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10011718 [exp]	3.2	0.8141
AT5G08350			GRAM domain-containing protein...		Lus10010167 [exp]	5.5	0.7931
AT4G13020		MHK	Protein kinase superfamily pro...		Lus10003155 [exp]	7.3	0.8227
AT5G27950			P-loop containing nucleoside t...		Lus10018999 [exp]	7.7	0.8221
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10003598 [exp]	8.4	0.7885
					Lus10037674 [exp]	10.9	0.7488
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10007726 [exp]	13.8	0.6950
AT3G11680			Aluminium activated malate tra...		Lus10013577 [exp]	16.2	0.7003

Compare expression of checked genes

Lus10021828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.