Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58980 126 / 1e-33 Neutral/alkaline non-lysosomal ceramidase (.1) AT2G38010 117 / 2e-30 Neutral/alkaline non-lysosomal ceramidase (.1.2) AT1G07380 112 / 7e-29 Neutral/alkaline non-lysosomal ceramidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034564 [exp] 241 / 7e-79 AT5G58980 458 / 9e-156 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10005873 [exp] 125 / 3e-33 AT1G07380 1178 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10001198 [exp] 117 / 1e-32 AT1G07380 384 / 4e-129 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10021122 [exp] 115 / 7e-30 AT2G38010 1096 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2) Lus10017188 [exp] 103 / 1e-25 AT2G38010 1100 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013300 [exp] 154 / 1e-43 AT2G38010 885 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2) Potri.016G110000 [exp] 133 / 4e-36 AT1G07380 1137 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.001G247400 [exp] 126 / 1e-33 AT1G07380 1172 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.009G040600 [exp] 120 / 1e-31 AT1G07380 1188 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04734 [flax] [poplar] Ceramidase_alk Neutral/alkaline non-lysosomal ceramidase, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10021829 pacid=23159303 polypeptide=Lus10021829 locus=Lus10021829.g ID=Lus10021829.BGIv1.0 annot-version=v1.0 ATGGATACACGTTACAGTAAGAACCTTCGAGCTAATGGGTCATTTCTCAGGGTTGGTAAAGACTACCTGCCTCCATTACCTCACCAACTCAATCGAATTT TCAGGGGTGATTTCACAAGTGTTCAGAACTTTTTCTCAAGGGAGTCACCACCCGAAGGCGTGAAATTCGGGGACATAAAACAGGACGTTGTAAGTCAATA TTTCAAAAGTGGGGATCGAGTGAGTGCCACATTTTGGAGCGCTAACCCGAGATATGATCTGCTGACGGAAGGGACGTTTGCAGGAGTAGAGATGCTTCTT CATGGGGAGAAGAAGTGTGTCCCAATGTTCGACGACGATGACTTTAGCTTGCGTTTCAAGTGGGGAGTGGACAATGCAACGAGTTCTAGCTTGGCAACTG TGGAATGGGAGATACATGACGAGGCAAGTTCTGGTGTGTACAGGTTAAGACACTTTGGTTCAGCAAAGGAAACCATAATTTCTCAAGTTGGCTATTTTAC TGGTGCATCTAGTGGGTTTGCAGTTGGTTACGCATTGCAAAGTAGAATGTGGAAGATTAATTAA
AA sequence Show only first row Show all	>Lus10021829 pacid=23159303 polypeptide=Lus10021829 locus=Lus10021829.g ID=Lus10021829.BGIv1.0 annot-version=v1.0 MDTRYSKNLRANGSFLRVGKDYLPPLPHQLNRIFRGDFTSVQNFFSRESPPEGVKFGDIKQDVVSQYFKSGDRVSATFWSANPRYDLLTEGTFAGVEMLL HGEKKCVPMFDDDDFSLRFKWGVDNATSSSLATVEWEIHDEASSGVYRLRHFGSAKETIISQVGYFTGASSGFAVGYALQSRMWKIN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58980			Neutral/alkaline non-lysosomal...		Lus10021829 [exp]	0	1
					Lus10022993 [exp]	1.4	0.9892
					Lus10002291 [exp]	2.0	0.9878
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008441 [exp]	3.0	0.9809
AT1G65590		HEXO3, ATHEX1	beta-hexosaminidase 3 (.1)		Lus10022251 [exp]	3.5	0.9715
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10004262 [exp]	5.5	0.9536
					Lus10033901 [exp]	5.5	0.9639
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10042155 [exp]	6.9	0.9439
AT5G52170	HD	HDG7	homeodomain GLABROUS 7 (.1)		Lus10035095 [exp]	7.0	0.9615
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10009583 [exp]	7.3	0.9623
					Lus10032696 [exp]	7.3	0.9557

Compare expression of checked genes

Lus10021829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.