Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42220 494 / 7e-161 Ubiquitin-like superfamily protein (.1) AT5G25270 114 / 5e-26 Ubiquitin-like superfamily protein (.1) AT2G17200 58 / 3e-08 DSK2 ubiquitin family protein (.1) AT2G17190 56 / 1e-07 ubiquitin family protein (.1) AT3G52590 50 / 4e-07 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT2G36170 50 / 4e-07 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT5G11080 51 / 2e-06 Ubiquitin-like superfamily protein (.1.2) AT1G31340 49 / 2e-06 NEDD8, ATRUB1, RUB1 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1) AT1G23410 49 / 2e-06 Ribosomal protein S27a / Ubiquitin family protein (.1) AT2G47110 49 / 2e-06 UBQ6 ubiquitin 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034562 [exp] 788 / 0 AT5G42220 197 / 7e-55 Ubiquitin-like superfamily protein (.1) Lus10034563 [exp] 657 / 0 AT5G42220 444 / 3e-148 Ubiquitin-like superfamily protein (.1) Lus10040001 [exp] 95 / 1e-19 AT5G25270 328 / 3e-102 Ubiquitin-like superfamily protein (.1) Lus10008806 [exp] 94 / 3e-19 AT5G23740 282 / 1e-89 ribosomal protein S11-beta (.1) Lus10008873 [exp] 50 / 6e-07 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10023934 [exp] 53 / 1e-06 AT2G17200 565 / 0.0 ubiquitin family protein (.1) Lus10030894 [exp] 49 / 2e-06 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 49 / 2e-06 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10014433 [exp] 52 / 3e-06 AT2G17200 567 / 0.0 ubiquitin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013500 [exp] 641 / 0 AT5G42220 602 / 0.0 Ubiquitin-like superfamily protein (.1) Potri.005G247900 [exp] 621 / 0 AT5G42220 471 / 6e-152 Ubiquitin-like superfamily protein (.1) Potri.018G115500 [exp] 154 / 1e-38 AT5G25270 352 / 2e-111 Ubiquitin-like superfamily protein (.1) Potri.006G059700 [exp] 151 / 1e-37 AT5G25270 343 / 3e-108 Ubiquitin-like superfamily protein (.1) Potri.005G100200 [exp] 62 / 2e-09 AT2G17200 478 / 2e-164 ubiquitin family protein (.1) Potri.004G194000 [exp] 50 / 5e-07 AT3G52590 210 / 3e-71 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.015G007100 [exp] 50 / 5e-07 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.012G024300 [exp] 50 / 5e-07 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.016G077200 [exp] 50 / 5e-07 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.016G077000 [exp] 48 / 1e-06 AT3G52590 194 / 1e-65 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family
Representative CDS sequence Show only first row Show all	>Lus10021830 pacid=23159327 polypeptide=Lus10021830 locus=Lus10021830.g ID=Lus10021830.BGIv1.0 annot-version=v1.0 ATGGCAGATCATCACCCCCATGAAGGATCTAGTACAAGCAATGTTTCTGGTGAAACATCGGACTCAAGTGTGCAGCTCAACGTGAAGACCTTAGATTCAC AGGTTTACAGTTTCCAGGTGGATAAGAAGATGTCAGTTGCAGCTTTCAAGGAGAAAATAGCTAGTGAAATTGGTGTGCCAGTTAATCAGCAGAGACTTAT TTTTCGAGGAAGGGTGTTGAAAGATGACCATTTTCTATCTGAACATCGTATCCTAGCACCTGTACAGTTCTCCTGCTTGCATTTGGTTGCAAGGCAGCCT GCACCGACACAACCATTATCTGAGACCAACCCTGGAGACTCAAATCCAAACAGTGGTAACCACGGTACTAAGTTGATCTCTCTGTCTCATGGTCTGTTTC TTGGCACTTTGTTGTCTGTTGTAAGTAGGGCAAGTTGTGCAGGAACCAATGCTAGTTTTGTTGGGCCCGGTAATTTCCCAGGGCAGATTTCGCACAGTGT AATGCTAGGGATAGTTAATGTTGGAGGTCAATCTGAGGGCATGGTTCCAGATCTATCGAGGGTTATTGGGGCTGTGCTGAACTCTATAGGTGACATGGGA AGCATGCAGTTCCAACCTACGCCTAATGTTACTGGCCAGACTCATCAAGGAGGTAATGGAAGCGTTGGAAATGTCGGTCAGAATCAAGCGGGGAACCAAA CAGGAGGTCAAGCGCAGCCTGGTCTTGCGTTCCAATCACAGCCCCGTGTTGTACAAATTCCACTTGCTACAGCCATACCTATACCCACTTTCCAATTGCC AATTCCTGATTCTCTGAATACCATCTCTGAGTTTTTGAGCCGGATGGAGCAAGTTCTCAGCCAAAATGGTTCTGAGCAGAGTGTACCTTCAACCACATCA GGAGCCACGCCAGGGGTTGAGTTACCTTCCAATATTCAGGCATTACATGCAATAGAAGCGTTAAGCATTGTCTTGCGACAAGCTGAACGACTTCTGGGTA GTCATGCAGTAGCTGCATTGTCTCATCTTGCCGGGCGTCTGGAAGGAGAGGGCAGTTCTTCCGATCTCAACATCAGGAGCCAAATTCAAACAGAAACTGT GCAATCGGGTCTTGCAATGCAACATCTAGGTGCTCTGTTTTTGGAGCTGGGTCGCACTTTGTTAACATTGCGTATGGGACAATCTTCTGGAGAGTCCTCC ATACATTCTGGTCCTGCCGTTTATATATCCCCATCAGGACCTAATCCCATAATGACCCAGCCCTTTCCTTTGCAAACTCATACTCTGTTTGGTGGCATCG GTGTCCAACCAAATTCTGTGCCCGTTGCTCCTGTTGGTGTAGGCAATGCCCCGAGGCATGTAAATATACACATACATGCTGGTACTACATTGGCACCCTC ACTTCCTAACATGTCTGCCACAGCAGGCAACGGGGAAGGCACTCAGGCTCAACCGGGTCATGCTAGTGGTCCTGGTGGTGCGGTTCAATTAAGAGTAGTT CCTGTGAGAAATGTCGCTGCTGGAGTACCTCCACATTCTAGTGGTGTGACAGTATCAGGTATAGAATCATCTGCTACTGTTGATCCACCAGCTGACCTGG CCTCAATGTCTTCTATGGTAGCTCGGATCAATACACGGCTGAGAGATCTTATGGAGAACTTCCCAGGGCATGGCCAAGCTGTACCAGGACCTGAAGGGCC TGCTGGTGGTAGTGATGCTGCTGGACAACAGGATTCTACTTTGACTGTTGATAGAGCTGCAGAGTCGGTTGGGTCCTTGCCTAGTCTTGTATCTGAAGGT GACAATGAGAAGATGCAAGGTGAAATTGTCCAAGTTAGCAGGAATGAAGAGAAAGATAACCGTAATACCTCAAAAGATGCGTCCTCTTGCTCAGTGACAT CTTCAAGTGGAGACGCTTCACAGAAGAAGGAAGGGAATCCAGAAAATATTACAAGTGCTGGTTCAAGCCATGATCTTCCTGAACCTAAGGGTGCGCCTCT TGGCTTGGGTTTGGGGAATTTGGAACGTAAGAAACGAGTTAAGCAGCAAAAAGCCACTGGTACAAACAGTGATTGCCAAACAACAGATACAAACGTTAAT CAGAATGCTGACTTCATGGGAATGACTCCGCAGCAACTCTTGCAGACACTGGGCTCCCGAAGCTCTGTTACCAGGGTGGTTTCAGGTGACACACCCTCAG GTCAAGTTCCTCCCTTCGGGGTGAGTAGTGAGGGCATAGAACATGATACTGATGGACGCCTGGATGCTGTGTCGGAAGCTCTGCGTAGCCCTGGTTTAGA TAATTTGTTGGCAGGGGTTTCCCAGCATACTGGTATGGGTTCTCCCAATGTCTTGAGGAACATGCTGCAGGGGCTCACTCAGAACCCTCAGATCATGAAC GCTGTCGGTCAAATCGCTCAGCAGGTCGACACCCAAGATATTGGTAACATGTTTGCAGGTGCAGGAGCAGGCCAAGGAGGTGGTGGCTTTGACCTCTCAA GGATGGTACAACAGATGATGCCTGTTGTTTCCCAGGTATTGGGACAAGGTTCTGCATTTCCAGTCCCAGGGCCTGTACCCCAGAGGATTAATGCTGGAGC TCAAGAACCCAGTGACCAGAATGTTCAGGCAAACCTGCTTGATGTGGCTCAGAGGATTGAACACGGAGATGCACCTGAAGATATATTCCAAGCCATGGCT GAAAGTGCAGTTACGCTGAGTGGCAGCGGTGTAATGGCACAAGATTTAAGCAACATGGATGATTTAGCTAATGAATACATGGCTATGGTACATGAGGACC TGCGACGACGGTTTGGAGACGACCTTAACCATGATTGA
AA sequence Show only first row Show all	>Lus10021830 pacid=23159327 polypeptide=Lus10021830 locus=Lus10021830.g ID=Lus10021830.BGIv1.0 annot-version=v1.0 MADHHPHEGSSTSNVSGETSDSSVQLNVKTLDSQVYSFQVDKKMSVAAFKEKIASEIGVPVNQQRLIFRGRVLKDDHFLSEHRILAPVQFSCLHLVARQP APTQPLSETNPGDSNPNSGNHGTKLISLSHGLFLGTLLSVVSRASCAGTNASFVGPGNFPGQISHSVMLGIVNVGGQSEGMVPDLSRVIGAVLNSIGDMG SMQFQPTPNVTGQTHQGGNGSVGNVGQNQAGNQTGGQAQPGLAFQSQPRVVQIPLATAIPIPTFQLPIPDSLNTISEFLSRMEQVLSQNGSEQSVPSTTS GATPGVELPSNIQALHAIEALSIVLRQAERLLGSHAVAALSHLAGRLEGEGSSSDLNIRSQIQTETVQSGLAMQHLGALFLELGRTLLTLRMGQSSGESS IHSGPAVYISPSGPNPIMTQPFPLQTHTLFGGIGVQPNSVPVAPVGVGNAPRHVNIHIHAGTTLAPSLPNMSATAGNGEGTQAQPGHASGPGGAVQLRVV PVRNVAAGVPPHSSGVTVSGIESSATVDPPADLASMSSMVARINTRLRDLMENFPGHGQAVPGPEGPAGGSDAAGQQDSTLTVDRAAESVGSLPSLVSEG DNEKMQGEIVQVSRNEEKDNRNTSKDASSCSVTSSSGDASQKKEGNPENITSAGSSHDLPEPKGAPLGLGLGNLERKKRVKQQKATGTNSDCQTTDTNVN QNADFMGMTPQQLLQTLGSRSSVTRVVSGDTPSGQVPPFGVSSEGIEHDTDGRLDAVSEALRSPGLDNLLAGVSQHTGMGSPNVLRNMLQGLTQNPQIMN AVGQIAQQVDTQDIGNMFAGAGAGQGGGGFDLSRMVQQMMPVVSQVLGQGSAFPVPGPVPQRINAGAQEPSDQNVQANLLDVAQRIEHGDAPEDIFQAMA ESAVTLSGSGVMAQDLSNMDDLANEYMAMVHEDLRRRFGDDLNHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	0	1
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10007803 [exp]	1.4	0.9038
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017748 [exp]	1.4	0.9014
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10029574 [exp]	1.7	0.8967
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10004741 [exp]	2.0	0.8870
AT1G04140			Transducin family protein / WD...		Lus10000495 [exp]	3.2	0.8847
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	4.6	0.8738
AT1G22870			Protein kinase family protein ...		Lus10030346 [exp]	6.0	0.8556
AT5G12400			DNA binding;zinc ion binding;D...		Lus10014918 [exp]	6.3	0.8381
AT4G02480			AAA-type ATPase family protein...		Lus10036347 [exp]	7.5	0.8689
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	8.1	0.8746

Compare expression of checked genes

Lus10021830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.