Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20430 111 / 4e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034561 [exp] 205 / 4e-70 AT1G20430 108 / 5e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G013601 [exp] 131 / 4e-41 AT1G20430 122 / 1e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021831 pacid=23159341 polypeptide=Lus10021831 locus=Lus10021831.g ID=Lus10021831.BGIv1.0 annot-version=v1.0 ATGGCTTCCACTGGCTCAGCAGCTGACGCCCAAAACCCTAGACAAGCTACAGGCTTCCTAGCAAACGCCATCAAGCGGAAACACAGTTTTATCCAGTTTG CCGCGATGACGGGGATCCTGCTTCTCAGCGTTAGATCGCTGGGGCAGAAGTACCGAATCCATGACCTTGAGGATGATACTTCGGCTCTCAAGGAGGAGCA GCAGACGCTCTCTGACCGAATGAAGAACATCAAAGAAGCTTTGTTGCAGGAAGCGTCTCACGAGCCTACCGGCCGATTCGCCACACGCCTTGGCAGTCTC TTCAGCGAGCAAGACTCGAACTAA
AA sequence Show only first row Show all	>Lus10021831 pacid=23159341 polypeptide=Lus10021831 locus=Lus10021831.g ID=Lus10021831.BGIv1.0 annot-version=v1.0 MASTGSAADAQNPRQATGFLANAIKRKHSFIQFAAMTGILLLSVRSLGQKYRIHDLEDDTSALKEEQQTLSDRMKNIKEALLQEASHEPTGRFATRLGSL FSEQDSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20430			unknown protein		Lus10021831 [exp]	0	1
AT5G49210			unknown protein		Lus10036792 [exp]	11.3	0.7977
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10017010 [exp]	13.0	0.8250
AT2G04630		NRPE6B, NRPB6B	RNA polymerase Rpb6 (.1)		Lus10015000 [exp]	13.8	0.8297
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10029155 [exp]	16.8	0.8030
AT1G07170			PHF5-like protein (.1.2.3)		Lus10040654 [exp]	16.9	0.8036
AT5G16950			unknown protein		Lus10021093 [exp]	25.9	0.8126
AT5G64180			unknown protein		Lus10008120 [exp]	33.1	0.7806
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10004961 [exp]	34.6	0.7829
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10011957 [exp]	35.3	0.8007
AT3G61540			alpha/beta-Hydrolases superfam...		Lus10010141 [exp]	42.7	0.7700

Compare expression of checked genes

Lus10021831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.