Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42770 53 / 6e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56420 52 / 2e-07 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G59000 51 / 2e-07 F-box/RNI-like superfamily protein (.1.2) AT5G56690 50 / 7e-07 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT3G59250 49 / 1e-06 F-box/RNI-like superfamily protein (.1) AT2G04230 49 / 2e-06 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT1G16940 48 / 2e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G59210 48 / 2e-06 F-box/RNI-like superfamily protein (.1.2.3.4) AT5G02910 48 / 3e-06 F-box/RNI-like superfamily protein (.1.2) AT1G19070 45 / 3e-06 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027019 [exp] 219 / 3e-71 AT5G22610 53 / 7e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10025561 [exp] 216 / 9e-70 AT3G49150 52 / 2e-07 F-box/RNI-like superfamily protein (.1) Lus10025560 [exp] 201 / 3e-64 AT5G22610 53 / 5e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034559 [exp] 155 / 1e-48 AT3G59000 53 / 8e-10 F-box/RNI-like superfamily protein (.1.2) Lus10027020 [exp] 135 / 2e-39 AT1G51370 58 / 6e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) Lus10015246 [exp] 126 / 6e-34 AT5G44960 44 / 8e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10041818 [exp] 52 / 2e-07 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10028368 [exp] 48 / 4e-07 AT1G13570 69 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10040760 [exp] 49 / 1e-06 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098700 [exp] 49 / 1e-06 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.011G024600 [exp] 48 / 3e-06 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.014G163866 [exp] 45 / 3e-05 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.002G132400 [exp] 44 / 6e-05 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 44 / 7e-05 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.011G121500 [exp] 43 / 0.0001 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.011G024300 [exp] 42 / 0.0003 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002001 [exp] 41 / 0.0003 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.015G011200 [exp] 41 / 0.0005 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10021833 pacid=23159346 polypeptide=Lus10021833 locus=Lus10021833.g ID=Lus10021833.BGIv1.0 annot-version=v1.0 ATGGAGAGGTTACCAGATGAGCTACTCACAGAGATATTAGGGTGGTTGCCGGTGGAGGAAGCCGCAATAACCAGCCTTGTTTCGAAGCGATGGCGATACG CCTGGAGAAACCCACCCAACCCTCACTTCGACGGCAACAAGATAACCAAATTCAGGAGCGATGGCTATCCCGTCTCCCATTTCCAAAGCCTCCACGATTT CTACACGTGGATGGACGAGATGATCCGCCATCTGGAACAGAAGAACAAGGAGACTGGTTTCTGGATTGAATCGTTAGGTCTCAACTTCAAGCCAGATGAG GAATATGAAGAGGAAGATGAAGAAGACAGTTATGGATGGATTGAATTTAGGAATTCAGACGACTCTCTAATAATCGGGGGATTCAGAGTTGTGCGTCTCT TGTCTTTGTCGACAACTCCTGGAATCAATCTGAGCGTTGTGCTATCTCGGTGTCGGCGGCCGTATCTGCTGAAAAACCTGACACTGAACAACTGTGATAT GGGAATCCTGAAGAGTGAACTAGTATTCGGAGCAAACGGAGACAGTTTCAGGTCTCTGGAATCACTGGTTTTCGACTGCGGTGGGAAAGAAATACATTTT GATATGATAATAAGCTTCATCATAGGTATCCCGTCGGTGATGAGTATCACGTTGGAGCAGTGCATACTTACCGATGAAGACCAACCAAACCTCAATAAAA GTAGGATCGAGTTTTCCTTGTCTCAAAACAGGCAGATTACTAGCCTTCGATTCTTCACTTAA
AA sequence Show only first row Show all	>Lus10021833 pacid=23159346 polypeptide=Lus10021833 locus=Lus10021833.g ID=Lus10021833.BGIv1.0 annot-version=v1.0 MERLPDELLTEILGWLPVEEAAITSLVSKRWRYAWRNPPNPHFDGNKITKFRSDGYPVSHFQSLHDFYTWMDEMIRHLEQKNKETGFWIESLGLNFKPDE EYEEEDEEDSYGWIEFRNSDDSLIIGGFRVVRLLSLSTTPGINLSVVLSRCRRPYLLKNLTLNNCDMGILKSELVFGANGDSFRSLESLVFDCGGKEIHF DMIISFIIGIPSVMSITLEQCILTDEDQPNLNKSRIEFSLSQNRQITSLRFFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G42770			F-box/RNI-like/FBD-like domain...		Lus10021833 [exp]	0	1
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Lus10004846 [exp]	2.0	0.8966
AT1G71690			Protein of unknown function (D...		Lus10003512 [exp]	2.8	0.8862
AT1G29380			Carbohydrate-binding X8 domain...		Lus10025379 [exp]	4.2	0.8812
AT2G37240			Thioredoxin superfamily protei...		Lus10030582 [exp]	6.3	0.8521
AT5G12000			Protein kinase protein with ad...		Lus10006021 [exp]	6.3	0.8555
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10029021 [exp]	9.2	0.8789
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028864 [exp]	9.5	0.8613
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10034244 [exp]	10.5	0.8687
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10023866 [exp]	12.7	0.8392
AT5G65550			UDP-Glycosyltransferase superf...		Lus10008956 [exp]	13.9	0.8435

Compare expression of checked genes

Lus10021833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.