Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76140 155 / 8e-45 Prolyl oligopeptidase family protein (.1.2) AT1G20380 151 / 2e-43 Prolyl oligopeptidase family protein (.1) AT1G50380 79 / 8e-18 Prolyl oligopeptidase family protein (.1) AT1G69020 47 / 7e-07 Prolyl oligopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034556 [exp] 196 / 1e-59 AT1G76140 1056 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10021235 [exp] 174 / 7e-52 AT1G76140 1184 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10019994 [exp] 174 / 8e-52 AT1G76140 1008 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10034558 [exp] 170 / 5e-51 AT1G76140 565 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10015387 [exp] 76 / 1e-16 AT1G50380 1096 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032920 [exp] 72 / 2e-15 AT1G50380 1018 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10004631 [exp] 50 / 8e-08 AT1G69020 830 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026683 [exp] 46 / 3e-06 AT1G69020 785 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10015586 [exp] 42 / 5e-05 AT1G50380 348 / 5e-114 Prolyl oligopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G014000 [exp] 157 / 1e-45 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247300 [exp] 155 / 8e-45 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G013900 [exp] 154 / 2e-44 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247400 [exp] 154 / 3e-44 AT1G76140 1210 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.007G001300 [exp] 79 / 9e-18 AT1G50380 1149 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G035900 [exp] 44 / 1e-05 AT5G66960 1087 / 0.0 Prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10021835 pacid=23159316 polypeptide=Lus10021835 locus=Lus10021835.g ID=Lus10021835.BGIv1.0 annot-version=v1.0 ATGAGTGTACCTGGATTCGATCGAGCAGAGTTCCAAGTGAATCAGGTTTTTGTGACTAGTAAGGAAGGGACCAAGTTCCCGATGTTCATCGGGTCAAAGA AAGACATGAAACTGGATGGATCACACCCATGCTTGCTGTATGGATATGGTGGATTTGGGTACACCAATACTCCAAATTTCACTGCAAATCGGATAACACT GGGGAAGCATTTAGGAGTAGTGTTCTGCATTGCCAACATACGTGGTGGTGGAGAGTACGGTGAAGAATGGCACAAAGCAGGATCACTTGCAACAAGCAGA ACGTCTTTGACGACTTCATCTCTGCCGCTGAATACATCGTATCAGCTGGTTACACCACCCAGAAAAGGCTATGCATCGAAGGTCAAAGCAACGGAGGCCT CCTCGTAG
AA sequence Show only first row Show all	>Lus10021835 pacid=23159316 polypeptide=Lus10021835 locus=Lus10021835.g ID=Lus10021835.BGIv1.0 annot-version=v1.0 MSVPGFDRAEFQVNQVFVTSKEGTKFPMFIGSKKDMKLDGSHPCLLYGYGGFGYTNTPNFTANRITLGKHLGVVFCIANIRGGGEYGEEWHKAGSLATSR TSLTTSSLPLNTSYQLVTPPRKGYASKVKATEASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76140			Prolyl oligopeptidase family p...		Lus10021835 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10035637 [exp]	2.4	0.8708
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10009948 [exp]	3.2	0.7859
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10043454 [exp]	6.0	0.7313
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10019652 [exp]	6.9	0.7635
AT5G41010		NRPE12, NRPD12,...	DNA directed RNA polymerase, 7...		Lus10007891 [exp]	7.3	0.7780
					Lus10022997 [exp]	9.5	0.7659
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10035462 [exp]	11.2	0.6988
AT5G17680			disease resistance protein (TI...		Lus10005174 [exp]	11.5	0.7702
					Lus10041373 [exp]	14.0	0.7598
AT5G14610			DEAD box RNA helicase family p...		Lus10035149 [exp]	15.2	0.7323

Compare expression of checked genes

Lus10021835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.