Plant FIBer expression Database

Lus10021836 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76130 700 / 0 ATAMY2, AMY2 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1)
AT1G69830 416 / 9e-138 ATAMY3, AMY3 alpha-amylase-like 3 (.1)
AT4G25000 344 / 2e-115 AMY1, AMY3, ATAMY1 alpha-amylase-like (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036717
[exp]
415 / 3e-137 AT1G69830 1175 / 0.0 alpha-amylase-like 3 (.1)
Lus10013270
[exp]
411 / 1e-135 AT1G69830 1180 / 0.0 alpha-amylase-like 3 (.1)
Lus10037211
[exp]
408 / 2e-134 AT1G69830 1156 / 0.0 alpha-amylase-like 3 (.1)
Lus10030793
[exp]
405 / 1e-130 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1)
Lus10042655
[exp]
343 / 8e-115 AT4G25000 567 / 0.0 alpha-amylase-like (.1)
Lus10021728
[exp]
337 / 2e-112 AT4G25000 563 / 0.0 alpha-amylase-like (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G014300
[exp]
738 / 0 AT1G76130 709 / 0.0 ARABIDOPSIS THALIANA ALPHA-AMYLASE-LIKE 2, alpha-amylase-like 2 (.1)
Potri.017G093200
[exp]
428 / 2e-141 AT1G69830 514 / 6e-168 alpha-amylase-like 3 (.1)
Potri.010G092900
[exp]
412 / 6e-136 AT1G69830 1236 / 0.0 alpha-amylase-like 3 (.1)
Potri.014G029400
[exp]
360 / 1e-121 AT4G25000 580 / 0.0 alpha-amylase-like (.1)
Potri.002G126300
[exp]
351 / 3e-118 AT4G25000 591 / 0.0 alpha-amylase-like (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0369 GHD PF07821 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain
CL0058 Glyco_hydro_tim PF00128 Alpha-amylase Alpha amylase, catalytic domain
Representative CDS sequence
>Lus10021836 pacid=23159322 polypeptide=Lus10021836 locus=Lus10021836.g ID=Lus10021836.BGIv1.0 annot-version=v1.0
ATGGGTAACAATACCCAGATGCAGAGAAATGACAGAAAGAAAAGTAATGAGAGGAGTAACCAGGAGACTGATCCCGTGACTGTGATTCGTAATGGAAGAG
AAGTTCTTTTCCAGGCTTTTAATTGGGAGTCTCACAAGCATGATTGGTGGAGTAATCTGGAGAAGAAACTACCTGATATGGCAAAATCTGGGTTTACTTC
AGCTTGGTTGCCTCCGCCTACTGATTCTTTCGCTTCCGAAGGTTATCTTCCGCAGAATCTTTATTCACTCAACTCTTCATATGGTTCTGAGCAACTACTG
AAAGGTCTGCTTCACAAGATGAAGCAGTACAAAGTTAGAGCAATGGCTGATATAGTGATTAATCATCGAGTCGGGACAACCAAAGGGCACGGTGGGACGT
ATAACCGCTATGACGGGATTCCATTATCATGGGATGAACGTGCTGTTACTTCCTGTACTGGGGGACTGGGGAATAGAAGCACCGGTGACAATTTCCATGG
TGTTCCGAACATAGATCACTCACAACACTTTGTTCGGAAAGACATTATAGCTTGGCTGCAATGGCTGCGTTGCAACGTTGGATTTGAAGATTTTCGGTTT
GATTTCGCAAGAGGCTATTCATCTAAATATGTGAAAGAGTACATTGAAGCAGCGAGGCCGCAATTTGCTGTTGGGGAGTATTGGGATTCTTGCAACTATA
ATGGCAGTTATTTGGAGTATAATCAAGATAGCCACAGACAAAGGATTATTAACTGGATTGATGGCACATCTCAGCTCTCAGCTGCATTTGACTTCACTAC
TAAAGGAATCCTCCAGGAAGCTGTAAAGGGTCAATTATGGCGCCTCCGTGATGCTCAAGGGAAGCCTCCAGGGGTTTTAGGATGGTGGCCTTCGAGGGCG
GTCACATTTATTGACAACCATGACACAGGCTCAACACAGGCACATTGGCCTTTCCCTTCACGTCATATCATGGAGGGATATGCCTATATACTTACACATC
CAGGGATACCAACTGTGTTTTATGATCACTTTTACGACTGGGGAGACTCTACTCACGACCAGATTGTGAAACTGATTGACGTTAGGAAGCGACAGGACAT
CCACAGCCGATCACCGATCAAGATTATGGAGGCACAGCCAAACCTATACTCTGCAATGATAGGGGAGAAGGTATGCATGAAGATAGGAGATGGTTCGTGG
TGCCCAGAAGGAAAAGAATGGAACCTTGCAACATGTGGCCATAGCTATGCTGTGTGGCAAAAGTGA
AA sequence
>Lus10021836 pacid=23159322 polypeptide=Lus10021836 locus=Lus10021836.g ID=Lus10021836.BGIv1.0 annot-version=v1.0
MGNNTQMQRNDRKKSNERSNQETDPVTVIRNGREVLFQAFNWESHKHDWWSNLEKKLPDMAKSGFTSAWLPPPTDSFASEGYLPQNLYSLNSSYGSEQLL
KGLLHKMKQYKVRAMADIVINHRVGTTKGHGGTYNRYDGIPLSWDERAVTSCTGGLGNRSTGDNFHGVPNIDHSQHFVRKDIIAWLQWLRCNVGFEDFRF
DFARGYSSKYVKEYIEAARPQFAVGEYWDSCNYNGSYLEYNQDSHRQRIINWIDGTSQLSAAFDFTTKGILQEAVKGQLWRLRDAQGKPPGVLGWWPSRA
VTFIDNHDTGSTQAHWPFPSRHIMEGYAYILTHPGIPTVFYDHFYDWGDSTHDQIVKLIDVRKRQDIHSRSPIKIMEAQPNLYSAMIGEKVCMKIGDGSW
CPEGKEWNLATCGHSYAVWQK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G76130 ATAMY2, AMY2 ARABIDOPSIS THALIANA ALPHA-AMY... Lus10021836
[exp]
0 1
AT4G19840 AtPP2A-1, ATPP2... phloem protein 2-A1 (.1) Lus10018304
[exp]
2.0 0.9270
AT3G30340 nodulin MtN21 /EamA-like trans... Lus10007862
[exp]
3.7 0.8883
AT1G67070 PMI2, DIN9 PHOSPHOMANNOSE ISOMERASE 2, DA... Lus10033563
[exp]
4.0 0.8696
AT1G02170 AtMCP1b, ATMC1,... LSD ONE LIKE 3, ARABIDOPSIS TH... Lus10010766
[exp]
4.7 0.9224
AT5G14930 GENE101, SAG101 senescence-associated gene 101... Lus10014518
[exp]
6.0 0.9211
AT3G57670 C2H2ZnF WIP2, NTT WIP domain protein 2, NO TRANS... Lus10031271
[exp]
7.7 0.8748
AT5G14930 GENE101, SAG101 senescence-associated gene 101... Lus10032169
[exp]
8.4 0.8982
AT5G19040 ATIPT5 Arabidopsis thaliana ISOPENTEN... Lus10034025
[exp]
8.5 0.8943
AT5G51810 AT2353, GA20OX2... gibberellin 20 oxidase 2 (.1) Lus10041390
[exp]
9.0 0.8833
AT5G50890 alpha/beta-Hydrolases superfam... Lus10031455
[exp]
9.8 0.8986

Lus10021836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.