Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19430 299 / 7e-98 late embryogenesis abundant protein-related / LEA protein-related (.1) AT5G54370 206 / 3e-64 Late embryogenesis abundant (LEA) protein-related (.1) AT5G60520 203 / 2e-63 Late embryogenesis abundant (LEA) protein-related (.1) AT4G27400 190 / 5e-58 Late embryogenesis abundant (LEA) protein-related (.1) AT1G54890 188 / 2e-57 Late embryogenesis abundant (LEA) protein-related (.1) AT5G60530 187 / 8e-56 late embryogenesis abundant protein-related / LEA protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031297 [exp] 215 / 1e-67 AT5G54370 356 / 2e-122 Late embryogenesis abundant (LEA) protein-related (.1) Lus10038588 [exp] 202 / 8e-63 AT5G54370 481 / 6e-172 Late embryogenesis abundant (LEA) protein-related (.1) Lus10026972 [exp] 201 / 2e-62 AT5G54370 479 / 2e-171 Late embryogenesis abundant (LEA) protein-related (.1) Lus10020169 [exp] 199 / 7e-61 AT5G54370 479 / 5e-170 Late embryogenesis abundant (LEA) protein-related (.1) Lus10036107 [exp] 194 / 2e-59 AT5G60520 437 / 1e-154 Late embryogenesis abundant (LEA) protein-related (.1) Lus10033540 [exp] 188 / 2e-57 AT5G54370 396 / 2e-138 Late embryogenesis abundant (LEA) protein-related (.1) Lus10017577 [exp] 184 / 1e-55 AT5G54370 389 / 2e-135 Late embryogenesis abundant (LEA) protein-related (.1) Lus10031532 [exp] 182 / 1e-55 AT5G60520 426 / 4e-151 Late embryogenesis abundant (LEA) protein-related (.1) Lus10015149 [exp] 184 / 3e-55 AT5G60520 429 / 1e-150 Late embryogenesis abundant (LEA) protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G145700 [exp] 290 / 2e-95 AT3G19430 379 / 4e-126 late embryogenesis abundant protein-related / LEA protein-related (.1) Potri.009G097400 [exp] 296 / 3e-94 AT3G19430 402 / 5e-131 late embryogenesis abundant protein-related / LEA protein-related (.1) Potri.012G145400 [exp] 204 / 2e-63 AT5G54370 388 / 1e-134 Late embryogenesis abundant (LEA) protein-related (.1) Potri.011G127900 [exp] 202 / 1e-62 AT5G54370 429 / 1e-151 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G012500 [exp] 200 / 5e-62 AT5G60520 459 / 3e-163 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G012600 [exp] 191 / 5e-58 AT5G60520 481 / 2e-171 Late embryogenesis abundant (LEA) protein-related (.1) Potri.001G405650 [exp] 155 / 7e-45 AT5G54370 350 / 7e-121 Late embryogenesis abundant (LEA) protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06830 [flax] [poplar] Root_cap Root cap
Representative CDS sequence Show only first row Show all	>Lus10021837 pacid=23159357 polypeptide=Lus10021837 locus=Lus10021837.g ID=Lus10021837.BGIv1.0 annot-version=v1.0 ATGGTTAGTACTAGTACTGAACAACTGAAGAATATCAAGTCCAACTGGGTTCTCTTCTTGACATTTTCATCTTCCATTATCATGCTACTATTACCATGGG GAGCAACTGCTGCAGGGAGATCAGTCGCATGTAATGACCCTTTCTTTGGCACTTGCTATGGCCTTCTTCACACTTGTCCCAAACCTTGTTCCCGTCTCTG CGAGGTTGATTGCAGACTCTGTAAGCCTTACTGTGCATGTGACAAGCCTGGAGCAGTATGCCAGGACCCAAGATTCGTCGGTGGAGATGGGATAACGTTT TACTTCCATGGCAACAAAGACAAGGATTTTTGCTTGTTGACAGACCCACAGATCCACATTAATGGGCACTTCATCGGGAAAAAGAGCAATAAGGGAAGAG ACTTCACCTGGGTTCAAGCAGTAGGTATACTCTACGGTTCGCACCGGGTCTACATTGGTGCACAACAAGTTGGGAAGTGGGAATCATCACTTGACAACAT TCTAATCACTTTCAACGACGACCAAGTGACAATACCAGCCGCCAAGGGCCAGAAATGGAAGCCGAACCCATCAGCCGGGTTGACCATCCAGAGGCTAGCA GACACGAACAGAGTCGGAGTACAAGTAGAAGGGTTGTTGGAGATGGTAGCAACTGTGGTTCCAATCACTGAGGAAGAGTCGAGGGTACATGGATATGATG TCAAGGAAGACGATTGTTTTGCTCATTTGGAGCTCAACTTCAAATTTGTGTCGTCGTTAAGCGATTCTGTGGATGGAGTTTTGGGGCAAACTTACAGAGA TGGCTATAAGAGCAGAGTCAAAATCGGAGCAGCCATGCCTATTATGGGAAGGGCTGAGAACTTCGCCACTTCACATCTGTTCTCTGCAGATTGCGCGGTT TCAAACTTTGCGATGAACCAGGTCCTCTGA
AA sequence Show only first row Show all	>Lus10021837 pacid=23159357 polypeptide=Lus10021837 locus=Lus10021837.g ID=Lus10021837.BGIv1.0 annot-version=v1.0 MVSTSTEQLKNIKSNWVLFLTFSSSIIMLLLPWGATAAGRSVACNDPFFGTCYGLLHTCPKPCSRLCEVDCRLCKPYCACDKPGAVCQDPRFVGGDGITF YFHGNKDKDFCLLTDPQIHINGHFIGKKSNKGRDFTWVQAVGILYGSHRVYIGAQQVGKWESSLDNILITFNDDQVTIPAAKGQKWKPNPSAGLTIQRLA DTNRVGVQVEGLLEMVATVVPITEEESRVHGYDVKEDDCFAHLELNFKFVSSLSDSVDGVLGQTYRDGYKSRVKIGAAMPIMGRAENFATSHLFSADCAV SNFAMNQVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19430			late embryogenesis abundant pr...		Lus10021837 [exp]	0	1
AT3G08030			Protein of unknown function, D...		Lus10016393 [exp]	1.7	0.9718
AT4G33590			unknown protein		Lus10041131 [exp]	4.5	0.9686
AT4G37160		SKS15	SKU5 similar 15 (.1)		Lus10019642 [exp]	6.2	0.9699
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10041707 [exp]	8.1	0.9687
AT4G23740			Leucine-rich repeat protein ki...		Lus10027568 [exp]	9.5	0.9495
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10031855 [exp]	9.6	0.9444
AT4G34800			SAUR-like auxin-responsive pro...		Lus10007563 [exp]	10.7	0.9459
AT1G02460			Pectin lyase-like superfamily ...		Lus10009994 [exp]	12.2	0.9396
AT5G54370			Late embryogenesis abundant (L...		Lus10031297 [exp]	12.4	0.9583
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	12.6	0.9457

Compare expression of checked genes

Lus10021837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.