Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27280 189 / 1e-60 Zim17-type zinc finger protein (.1) AT1G68730 81 / 8e-19 Zim17-type zinc finger protein (.1) AT3G54826 45 / 8e-06 Zim17-type zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034555 [exp] 342 / 1e-120 AT5G27280 216 / 2e-71 Zim17-type zinc finger protein (.1) Lus10019154 [exp] 73 / 1e-16 AT1G68730 119 / 2e-35 Zim17-type zinc finger protein (.1) Lus10034401 [exp] 74 / 4e-16 AT1G68730 130 / 1e-38 Zim17-type zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G246200 [exp] 244 / 6e-82 AT5G27280 225 / 5e-75 Zim17-type zinc finger protein (.1) Potri.002G015900 [exp] 227 / 2e-75 AT5G27280 219 / 2e-72 Zim17-type zinc finger protein (.1) Potri.010G132400 [exp] 74 / 4e-16 AT1G68730 139 / 1e-42 Zim17-type zinc finger protein (.1) Potri.008G037300 [exp] 49 / 3e-07 AT3G54826 173 / 2e-54 Zim17-type zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05180 [flax] [poplar] zf-DNL DNL zinc finger
Representative CDS sequence Show only first row Show all	>Lus10021838 pacid=23159361 polypeptide=Lus10021838 locus=Lus10021838.g ID=Lus10021838.BGIv1.0 annot-version=v1.0 ATGGAAGCTCTGAGCTCATCTGCTGCCATCCTCTCCTCATCATCCTCCTCTTCATCATCATCGTCTCTCTCTTTCTTCTCGCCGAGGCGAAAGGATTCTT CCTTCAGAATCCTCCGATGCCACCCTTCCTCTTCCAAAAATAACGGAGATAATTCGGATCTGCGCTCTGGCTCCGACCCGAATGAGTCGACTAGCATCGT CCCTTTCTTCAATCGCAACACCCTTTCCAAGAGCAATTTTAATCAAGATGATGCCATGGGATTGGTTCTGAGCGCGGCGTCGCTCAGGGGATGGACAACC GGTTCCGGCATGGAAGGACCACCAGCACCCGCCGGAGCAGAAGGAGGATCCAATACTGACAAGGTTTCTACCTTGCCGTGGTCTTTGTTCACCAAGTCTC CCCGCCGGAGAATGCGGGTGGCTTTCACCTGCAACGTTTGCGGCCAACGCACCACCAGGGCCATTAACCCTCACGCCTACACCGACGGCACAGTCTTCGT TCAGTGCTGCGGATGCAATGTGTTTCATAAGCTGGTGGATAATCTGAACCTGTTCCATGAGATGAAGTGCTATGTGAACCCGGATTTCAAGTATAAGGAT TCGAAATGGGACTTTGGGTTTAGACTGTTTGACGATGAGGATCACGATCAGGATGATGATGGTGATGTTAATGCTTCATATCCAATCTGA
AA sequence Show only first row Show all	>Lus10021838 pacid=23159361 polypeptide=Lus10021838 locus=Lus10021838.g ID=Lus10021838.BGIv1.0 annot-version=v1.0 MEALSSSAAILSSSSSSSSSSSLSFFSPRRKDSSFRILRCHPSSSKNNGDNSDLRSGSDPNESTSIVPFFNRNTLSKSNFNQDDAMGLVLSAASLRGWTT GSGMEGPPAPAGAEGGSNTDKVSTLPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPDFKYKD SKWDFGFRLFDDEDHDQDDDGDVNASYPI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27280			Zim17-type zinc finger protein...		Lus10021838 [exp]	0	1
AT3G09830			Protein kinase superfamily pro...		Lus10013812 [exp]	3.6	0.8068
AT1G61065			Protein of unknown function (D...		Lus10018474 [exp]	4.2	0.8000
AT1G18890		CPK10, ATCDPK1,...	calcium-dependent protein kina...		Lus10036667 [exp]	5.7	0.7838
AT4G01575			serine protease inhibitor, Kaz...		Lus10030166 [exp]	8.4	0.7652
AT5G64230			unknown protein		Lus10033177 [exp]	8.5	0.7881
AT1G16840			unknown protein		Lus10034821 [exp]	9.8	0.7189
AT3G03440			ARM repeat superfamily protein...		Lus10017635 [exp]	10.1	0.7310
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Lus10018222 [exp]	11.8	0.7269
AT5G65760			Serine carboxypeptidase S28 fa...		Lus10011603 [exp]	12.1	0.7266
AT4G08455			BTB/POZ domain-containing prot...		Lus10042763 [exp]	12.5	0.7516

Compare expression of checked genes

Lus10021838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.