Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76070 59 / 1e-11 unknown protein AT1G20310 49 / 5e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034552 [exp] 197 / 7e-66 AT1G76070 66 / 5e-13 unknown protein Lus10017246 [exp] 117 / 2e-32 AT5G50410 186 / 7e-55 unknown protein Lus10005623 [exp] 107 / 8e-30 AT1G76070 116 / 2e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G016500 [exp] 91 / 6e-24 AT1G76070 116 / 4e-31 unknown protein Potri.005G245600 [exp] 79 / 6e-19 AT1G76070 97 / 1e-23 unknown protein Potri.005G107500 [exp] 43 / 4e-06 AT1G76070 57 / 1e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021840 pacid=23159347 polypeptide=Lus10021840 locus=Lus10021840.g ID=Lus10021840.BGIv1.0 annot-version=v1.0 ATGAGGCGGTTCGCTAGCGGGCACGGGGATGGGCTCAGGGATTTCGATTGGACGGGTCAGATCGCGGGATTGGAATCCAACGGTGCGTATTACTCTGATG AGGAAGAGGAGATAGGAGGGTACAGCGACGATGAGATGGAGGCGAAGGAGGTGATCGTGCCTTACTCGGTGCAGATGTGGGTTGGTGGTGACGTGGAAGG AAGGAGGCTTCAGCCGAGGAAGGAGGTCAATTTGTGGAAGCGGAGGACCATTGACCCTCCCCGGCCGCTTCAGCTGGTCGGGTCGTATTGA
AA sequence Show only first row Show all	>Lus10021840 pacid=23159347 polypeptide=Lus10021840 locus=Lus10021840.g ID=Lus10021840.BGIv1.0 annot-version=v1.0 MRRFASGHGDGLRDFDWTGQIAGLESNGAYYSDEEEEIGGYSDDEMEAKEVIVPYSVQMWVGGDVEGRRLQPRKEVNLWKRRTIDPPRPLQLVGSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76070			unknown protein		Lus10021840 [exp]	0	1
AT1G48300			unknown protein		Lus10009975 [exp]	1.7	0.8935
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10037490 [exp]	2.8	0.9017
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10036623 [exp]	3.0	0.9026
AT5G17680			disease resistance protein (TI...		Lus10041060 [exp]	3.5	0.8848
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040924 [exp]	4.5	0.8897
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	5.7	0.8921
AT1G01440			Protein of unknown function (D...		Lus10001910 [exp]	8.1	0.8508
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10030952 [exp]	8.9	0.7745
					Lus10012792 [exp]	11.0	0.8059
AT5G54165			unknown protein		Lus10023231 [exp]	11.8	0.8763

Compare expression of checked genes

Lus10021840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.