Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42200 104 / 1e-29 RING/U-box superfamily protein (.1) AT4G40070 74 / 2e-16 RING/U-box superfamily protein (.1) AT2G42350 69 / 3e-15 RING/U-box superfamily protein (.1) AT1G53820 69 / 7e-15 RING/U-box superfamily protein (.1) AT4G09120 69 / 9e-15 RING/U-box superfamily protein (.1) AT5G47610 65 / 5e-14 RING/U-box superfamily protein (.1) AT1G72310 66 / 9e-14 ATL3 RING/U-box superfamily protein (.1) AT5G05280 64 / 1e-13 RING/U-box superfamily protein (.1) AT2G20030 66 / 2e-13 RING/U-box superfamily protein (.1) AT3G05200 66 / 2e-13 ATL6 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034551 [exp] 233 / 1e-80 AT5G42200 112 / 2e-32 RING/U-box superfamily protein (.1) Lus10005617 [exp] 157 / 1e-50 AT5G42200 108 / 6e-31 RING/U-box superfamily protein (.1) Lus10017253 [exp] 157 / 2e-50 AT5G42200 126 / 4e-38 RING/U-box superfamily protein (.1) Lus10022743 [exp] 71 / 6e-16 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10041134 [exp] 71 / 2e-15 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10036466 [exp] 71 / 2e-15 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10029178 [exp] 69 / 1e-14 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10012987 [exp] 68 / 2e-14 AT5G40250 302 / 7e-101 RING/U-box superfamily protein (.1) Lus10004460 [exp] 68 / 2e-14 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G244500 [exp] 138 / 9e-43 AT5G42200 149 / 3e-46 RING/U-box superfamily protein (.1) Potri.002G017400 [exp] 136 / 6e-42 AT5G42200 154 / 2e-48 RING/U-box superfamily protein (.1) Potri.010G010500 [exp] 74 / 6e-17 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.013G025800 [exp] 71 / 3e-15 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.017G072300 [exp] 70 / 5e-15 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 69 / 8e-15 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 67 / 2e-14 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.001G351466 [exp] 67 / 3e-14 AT5G40250 355 / 2e-121 RING/U-box superfamily protein (.1) Potri.005G255200 [exp] 66 / 4e-14 AT1G76410 163 / 2e-51 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 67 / 5e-14 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10021842 pacid=23159307 polypeptide=Lus10021842 locus=Lus10021842.g ID=Lus10021842.BGIv1.0 annot-version=v1.0 ATGAGTGCTCTGTTCGTTGTCTACATTTGCCTCCTCTGCTTCTCTACCAATCCACCAATCAATCCTATTGTCGTCGGAAGAGAAGACTTGAAGCCGGCAG TGAAGAAGGGGCTTTCATCGGCGGAGCTTGAGAAGATGCCTAAAGTAACGGGGAAGGAGCTGTGGATGGGGAACGAGTGCGCGGTTTGCCTGGACGAGAT CGAGGAGAAACAAACGGCGAGACGGATTCCGGTGTGTAACCACGGATTCCACGTGGAATGCGCCGATAAGTGGTTGTCGAATAACCCGTTTTGCCCGGTG TGCCGGGGCAAAATCGACCGAGATCGGCTGCAGAATCCCGGTGGTTACGAAGACAGTCCTTGCTGA
AA sequence Show only first row Show all	>Lus10021842 pacid=23159307 polypeptide=Lus10021842 locus=Lus10021842.g ID=Lus10021842.BGIv1.0 annot-version=v1.0 MSALFVVYICLLCFSTNPPINPIVVGREDLKPAVKKGLSSAELEKMPKVTGKELWMGNECAVCLDEIEEKQTARRIPVCNHGFHVECADKWLSNNPFCPV CRGKIDRDRLQNPGGYEDSPC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42200			RING/U-box superfamily protein...		Lus10021842 [exp]	0	1
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10033315 [exp]	7.7	0.5443
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10022436 [exp]	15.8	0.5994
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Lus10040836 [exp]	25.9	0.5617
AT3G11110			RING/U-box superfamily protein...		Lus10009832 [exp]	33.1	0.5330
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Lus10042114 [exp]	40.8	0.5113
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10003917 [exp]	75.1	0.4882
AT2G38890			unknown protein		Lus10023488 [exp]	91.5	0.4737
AT1G25275			unknown protein		Lus10004192 [exp]	96.0	0.4648
AT5G61710			unknown protein		Lus10025039 [exp]	129.5	0.4551
AT2G03210		ATFUT2, FUT2	fucosyltransferase 2 (.1)		Lus10024079 [exp]	193.8	0.4020

Compare expression of checked genes

Lus10021842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.