Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76020 233 / 1e-77 Thioredoxin superfamily protein (.1) AT1G20225 221 / 7e-73 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005616 [exp] 298 / 6e-103 AT1G20225 251 / 9e-85 Thioredoxin superfamily protein (.1) Lus10017254 [exp] 288 / 4e-99 AT1G20225 246 / 1e-82 Thioredoxin superfamily protein (.1) Lus10034550 [exp] 133 / 4e-40 AT1G76020 57 / 3e-11 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G244400 [exp] 276 / 3e-94 AT1G20225 259 / 1e-87 Thioredoxin superfamily protein (.1) Potri.002G017500 [exp] 254 / 7e-86 AT1G20225 251 / 6e-85 Thioredoxin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021843 pacid=23159362 polypeptide=Lus10021843 locus=Lus10021843.g ID=Lus10021843.BGIv1.0 annot-version=v1.0 ATGAAGATGAAGATGGAGAATAAGCCACATCCCAATTTCCTCATTGCTCTTTGCATATTCATCATCTCTAATGGATTGTGTGCCGTTGAATCCCAATCGT TGCCGTCTGCCAAGTATGACGGGTTCCTCTACAACAACGGTCCAGTCGATCCGAATCCAATTTTCATAGAAGCTTTCTTCGACCCGGTTTGCCCCGACAG CAGAGATTCATGGCCTCCTCTCAAGCAAGCTCTTAACTACTACGGCTCTCGGGTTTTGCTGCGCCTTCACCTCCTCCCTTTACCGTACCATGATAACGCT TATGTTGCTTCACGAGCTATGCACATTGCAAACATGCTGAATGCTTCTTCTACTTTCCCACTGCTAGACCGCTTCTTCAAGTATCAGAACAAGTTCTACA ATGACCAAACGAAGAACCTGTCGAAAGCTACTGTGGTGAAAGAGGTTATTGATTTTGCAACCGTATCAGTCGGCAACTCCCTTCAGCCCCAATTCCAAGC TGCATTCACTGACTTAAGAACTGATCTTAAGACAAGGGTGTCCTTCAAGTTTAGTACATCGAGAGGCATTTACGGCACCCCTGCCTTTATGGTTAATGGG TTTGTGCTGCCCGGCGTTGGCTCTCCCGTTGATTACAAGAACTGGAGGAAGACCCTTGACCCACTGATTGCAACCAAGAATTCGGATACAACCCACTTAC TCTTTTAA
AA sequence Show only first row Show all	>Lus10021843 pacid=23159362 polypeptide=Lus10021843 locus=Lus10021843.g ID=Lus10021843.BGIv1.0 annot-version=v1.0 MKMKMENKPHPNFLIALCIFIISNGLCAVESQSLPSAKYDGFLYNNGPVDPNPIFIEAFFDPVCPDSRDSWPPLKQALNYYGSRVLLRLHLLPLPYHDNA YVASRAMHIANMLNASSTFPLLDRFFKYQNKFYNDQTKNLSKATVVKEVIDFATVSVGNSLQPQFQAAFTDLRTDLKTRVSFKFSTSRGIYGTPAFMVNG FVLPGVGSPVDYKNWRKTLDPLIATKNSDTTHLLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20225			Thioredoxin superfamily protei...		Lus10021843 [exp]	0	1
AT2G19110		ATHMA4, HMA4	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10006955 [exp]	3.0	0.7340
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10011722 [exp]	4.0	0.8155
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10018453 [exp]	8.0	0.7257
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10017266 [exp]	12.6	0.7537
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Lus10035006 [exp]	16.0	0.7171
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10033198 [exp]	18.0	0.6925
AT1G65440		GTB1	global transcription factor gr...		Lus10029079 [exp]	18.9	0.7024
AT4G22990			Major Facilitator Superfamily ...		Lus10009314 [exp]	20.3	0.7118
AT4G38660			Pathogenesis-related thaumatin...		Lus10013561 [exp]	25.1	0.6632
AT4G31140			O-Glycosyl hydrolases family 1...		Lus10024535 [exp]	25.1	0.6910

Compare expression of checked genes

Lus10021843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.