Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76010 226 / 8e-72 Alba DNA/RNA-binding protein (.1) AT1G20220 208 / 5e-65 Alba DNA/RNA-binding protein (.1) AT3G07030 152 / 1e-42 Alba DNA/RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034549 [exp] 416 / 2e-146 AT1G76010 276 / 5e-91 Alba DNA/RNA-binding protein (.1) Lus10005615 [exp] 270 / 1e-89 AT1G76010 264 / 3e-87 Alba DNA/RNA-binding protein (.1) Lus10017255 [exp] 265 / 4e-88 AT1G76010 251 / 2e-82 Alba DNA/RNA-binding protein (.1) Lus10022807 [exp] 151 / 3e-42 AT3G07030 241 / 4e-76 Alba DNA/RNA-binding protein (.1) Lus10011874 [exp] 152 / 2e-41 AT3G07030 239 / 2e-73 Alba DNA/RNA-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G017600 [exp] 260 / 7e-86 AT1G76010 216 / 3e-68 Alba DNA/RNA-binding protein (.1) Potri.005G244300 [exp] 252 / 6e-83 AT1G76010 221 / 7e-71 Alba DNA/RNA-binding protein (.1) Potri.002G066100 [exp] 220 / 6e-70 AT1G20220 200 / 1e-62 Alba DNA/RNA-binding protein (.1) Potri.005G194600 [exp] 214 / 5e-68 AT1G20220 194 / 6e-61 Alba DNA/RNA-binding protein (.1) Potri.002G240601 [exp] 144 / 1e-40 AT3G07030 199 / 3e-61 Alba DNA/RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0441 [flax] [poplar] AlbA PF01918 [flax] [poplar] Alba Alba
Representative CDS sequence Show only first row Show all	>Lus10021844 pacid=23159306 polypeptide=Lus10021844 locus=Lus10021844.g ID=Lus10021844.BGIv1.0 annot-version=v1.0 ATGGATCGTTACCAGAGAGTTGAGAAGCCGAGGGCTGAAACTCCTATCGATGAGAACGAGATTCGAATTACCAGCCAGGGGAGGATGCGCAATTACATCT CCTACGCCATGACCCTGCTTCAAGAGAAAGGTGCAGATGAAATTGTATTCAAGGCAATGGGTAGAGCTATTAACAAGACTGTGACCATAGTGGAGCTTAT CAAGAGGAGGATTGTTGGTCTTCATCAAGTGACATCAATTGGGTCTACTGATATCACGGATACATGGGAACCCCTAGAGGAAGGCCTCCTGCCTTTGGAA ACTACAAGGCATGTATCAATGATTACAGTGGTTCTCTCGAAGAAAGAATTGGATACATCATCCGTTGGGTATCAGCCCCCGTTGCCAGAAGACCAGGTGA AAGCCTCCACAGATTATGAATATGAAGGAGAGGGATCTCCAAATGGCCGAGCCAGGGGTCGTGGTGGCAGAGGCCGGGGTCGTGGGGGCAGAGGTAACGG ATATGTATCTGTTGATCATGAAGATGGAGGGTTTGATGGCCCAGGCTATGCCAGGGGCAGAGGCCGTGGTAGAGGACGTGGTTTCCGTGGCCGTGGTAGG GGAGGTTACAATGGTCCTCCTGCTGATGGAGAGCAAGATGGAGGTTACAATTATGATGCTCCTCGGCAGGGTGGCCGTGGTAGGAGAGGAGGTTATAATG GTCCTCCTGCCGATGCAGAGCATGATGGAGGCTACAACTATGATGCTCCTCGCCGGGGTGGTCGTGGTAGGAGGGGAGGTTATAATGGTCCTGCTGATGC ACAGCAAGATGGAGGCTACAGTTACGAACCTCGTCCACAGGGCACTGGCGGTAGGCGAGGAGGCTATAATGGTCCTCCTGCTGATGCACAGCAAGATGGT GACTACAATTACGATGCTCCACCGCAGCCCCGTGGGCGTGGCCGTGGAAGAGGGGGGCATCGCGGTGGCGGAAGAGGCCGTGGTGGTGGTAGATCAAATG GACCTATCCAGGCAGCTGCATGA
AA sequence Show only first row Show all	>Lus10021844 pacid=23159306 polypeptide=Lus10021844 locus=Lus10021844.g ID=Lus10021844.BGIv1.0 annot-version=v1.0 MDRYQRVEKPRAETPIDENEIRITSQGRMRNYISYAMTLLQEKGADEIVFKAMGRAINKTVTIVELIKRRIVGLHQVTSIGSTDITDTWEPLEEGLLPLE TTRHVSMITVVLSKKELDTSSVGYQPPLPEDQVKASTDYEYEGEGSPNGRARGRGGRGRGRGGRGNGYVSVDHEDGGFDGPGYARGRGRGRGRGFRGRGR GGYNGPPADGEQDGGYNYDAPRQGGRGRRGGYNGPPADAEHDGGYNYDAPRRGGRGRRGGYNGPADAQQDGGYSYEPRPQGTGGRRGGYNGPPADAQQDG DYNYDAPPQPRGRGRGRGGHRGGGRGRGGGRSNGPIQAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10021844 [exp]	0	1
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10038846 [exp]	2.8	0.8389
AT4G31930			Mitochondrial glycoprotein fam...		Lus10017126 [exp]	3.0	0.8173
AT1G60770			Tetratricopeptide repeat (TPR)...		Lus10013047 [exp]	3.5	0.8296
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10014680 [exp]	3.7	0.8638
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10031551 [exp]	4.7	0.8464
AT1G20370			Pseudouridine synthase family ...		Lus10005641 [exp]	7.3	0.8395
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10020164 [exp]	8.8	0.8243
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10004362 [exp]	11.5	0.7830
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016431 [exp]	11.6	0.8297
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10022237 [exp]	11.7	0.7821

Compare expression of checked genes

Lus10021844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.